Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3068 and Dshi_3069 are separated by 59 nucleotides Dshi_3069 and Dshi_3070 are separated by 95 nucleotides Dshi_3070 and Dshi_3071 overlap by 1 nucleotides Dshi_3071 and Dshi_3072 are separated by 55 nucleotides
Dshi_3068: Dshi_3068 - transcriptional regulator, LysR family (RefSeq), at 3,236,804 to 3,237,751
_3068
Dshi_3069: Dshi_3069 - protein of unknown function DUF465 (RefSeq), at 3,237,811 to 3,237,978
_3069
Dshi_3070: Dshi_3070 - methyltransferase small (RefSeq), at 3,238,074 to 3,238,844
_3070
Dshi_3071: Dshi_3071 - Beta tubulin, autoregulation binding site (RefSeq), at 3,238,844 to 3,239,071
_3071
Dshi_3072: Dshi_3072 - Polyprenyl synthetase (RefSeq), at 3,239,127 to 3,240,131
_3072
Position (kb)
3238
3239 Strain fitness (log2 ratio)
-2
-1
0
1 at 3237.132 kb on + strand, within Dshi_3068 at 3237.140 kb on - strand, within Dshi_3068 at 3237.201 kb on - strand, within Dshi_3068 at 3237.532 kb on + strand, within Dshi_3068 at 3237.598 kb on - strand, within Dshi_3068 at 3237.661 kb on - strand at 3237.755 kb on - strand at 3237.785 kb on - strand at 3237.827 kb on + strand at 3237.901 kb on + strand, within Dshi_3069 at 3237.939 kb on + strand, within Dshi_3069 at 3238.014 kb on + strand at 3238.409 kb on + strand, within Dshi_3070 at 3238.435 kb on - strand, within Dshi_3070 at 3238.454 kb on + strand, within Dshi_3070 at 3238.459 kb on + strand, within Dshi_3070 at 3238.494 kb on - strand, within Dshi_3070 at 3238.655 kb on + strand, within Dshi_3070 at 3238.655 kb on + strand, within Dshi_3070 at 3238.748 kb on + strand, within Dshi_3070 at 3238.874 kb on + strand, within Dshi_3071 at 3238.994 kb on + strand, within Dshi_3071 at 3238.994 kb on + strand, within Dshi_3071 at 3239.002 kb on - strand, within Dshi_3071 at 3239.015 kb on - strand, within Dshi_3071 at 3239.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,237,132 + Dshi_3068 0.35 -0.6 3,237,140 - Dshi_3068 0.35 -0.1 3,237,201 - Dshi_3068 0.42 +0.4 3,237,532 + Dshi_3068 0.77 +0.0 3,237,598 - Dshi_3068 0.84 -0.6 3,237,661 - -0.4 3,237,755 - -2.5 3,237,785 - -0.4 3,237,827 + -0.2 3,237,901 + Dshi_3069 0.54 -2.1 3,237,939 + Dshi_3069 0.76 -0.2 3,238,014 + -0.1 3,238,409 + Dshi_3070 0.43 -1.7 3,238,435 - Dshi_3070 0.47 -0.4 3,238,454 + Dshi_3070 0.49 -0.8 3,238,459 + Dshi_3070 0.50 -1.6 3,238,494 - Dshi_3070 0.54 +0.6 3,238,655 + Dshi_3070 0.75 -0.4 3,238,655 + Dshi_3070 0.75 -0.5 3,238,748 + Dshi_3070 0.87 -0.8 3,238,874 + Dshi_3071 0.13 +0.8 3,238,994 + Dshi_3071 0.66 -0.3 3,238,994 + Dshi_3071 0.66 -1.0 3,239,002 - Dshi_3071 0.69 -1.8 3,239,015 - Dshi_3071 0.75 -1.4 3,239,065 + -2.1
Or see this region's nucleotide sequence