Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3044 and Dshi_3045 are separated by 62 nucleotides Dshi_3045 and Dshi_3046 are separated by 3 nucleotides
Dshi_3044: Dshi_3044 - Feruloyl esterase (RefSeq), at 3,211,817 to 3,213,247
_3044
Dshi_3045: Dshi_3045 - glycosyl transferase family 2 (RefSeq), at 3,213,310 to 3,214,326
_3045
Dshi_3046: Dshi_3046 - Hydroxypyruvate reductase (RefSeq), at 3,214,330 to 3,215,577
_3046
Position (kb)
3213
3214
3215 Strain fitness (log2 ratio)
-2
-1
0
1 at 3212.446 kb on - strand, within Dshi_3044 at 3212.471 kb on - strand, within Dshi_3044 at 3212.653 kb on + strand, within Dshi_3044 at 3212.677 kb on - strand, within Dshi_3044 at 3212.707 kb on - strand, within Dshi_3044 at 3212.733 kb on - strand, within Dshi_3044 at 3212.751 kb on + strand, within Dshi_3044 at 3212.872 kb on - strand, within Dshi_3044 at 3212.949 kb on + strand, within Dshi_3044 at 3213.156 kb on + strand at 3213.164 kb on - strand at 3213.166 kb on + strand at 3213.168 kb on - strand at 3213.296 kb on + strand at 3213.302 kb on - strand at 3213.302 kb on - strand at 3213.302 kb on - strand at 3213.334 kb on - strand at 3213.455 kb on + strand, within Dshi_3045 at 3213.456 kb on + strand, within Dshi_3045 at 3213.505 kb on + strand, within Dshi_3045 at 3213.545 kb on - strand, within Dshi_3045 at 3213.571 kb on - strand, within Dshi_3045 at 3213.911 kb on + strand, within Dshi_3045 at 3213.911 kb on + strand, within Dshi_3045 at 3214.076 kb on - strand, within Dshi_3045 at 3214.087 kb on - strand, within Dshi_3045 at 3214.186 kb on + strand, within Dshi_3045 at 3214.347 kb on - strand at 3214.347 kb on - strand at 3214.450 kb on - strand at 3214.559 kb on - strand, within Dshi_3046 at 3214.892 kb on + strand, within Dshi_3046 at 3215.072 kb on - strand, within Dshi_3046
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,212,446 - Dshi_3044 0.44 -0.3 3,212,471 - Dshi_3044 0.46 -0.3 3,212,653 + Dshi_3044 0.58 -0.7 3,212,677 - Dshi_3044 0.60 -0.7 3,212,707 - Dshi_3044 0.62 -0.3 3,212,733 - Dshi_3044 0.64 +0.3 3,212,751 + Dshi_3044 0.65 +0.2 3,212,872 - Dshi_3044 0.74 -0.5 3,212,949 + Dshi_3044 0.79 -0.3 3,213,156 + -0.3 3,213,164 - -0.2 3,213,166 + +1.2 3,213,168 - +0.2 3,213,296 + -0.8 3,213,302 - -0.3 3,213,302 - -0.6 3,213,302 - -0.3 3,213,334 - -0.8 3,213,455 + Dshi_3045 0.14 -0.5 3,213,456 + Dshi_3045 0.14 -1.1 3,213,505 + Dshi_3045 0.19 +0.2 3,213,545 - Dshi_3045 0.23 -0.2 3,213,571 - Dshi_3045 0.26 -0.9 3,213,911 + Dshi_3045 0.59 -1.2 3,213,911 + Dshi_3045 0.59 -0.6 3,214,076 - Dshi_3045 0.75 -2.0 3,214,087 - Dshi_3045 0.76 -0.9 3,214,186 + Dshi_3045 0.86 -1.0 3,214,347 - -0.3 3,214,347 - -0.4 3,214,450 - +0.8 3,214,559 - Dshi_3046 0.18 -1.8 3,214,892 + Dshi_3046 0.45 +1.3 3,215,072 - Dshi_3046 0.59 -0.1
Or see this region's nucleotide sequence