Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3024 and Dshi_3025 are separated by 106 nucleotides Dshi_3025 and Dshi_3026 are separated by 55 nucleotides Dshi_3026 and Dshi_3027 are separated by 62 nucleotides
Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930
_3024
Dshi_3025: Dshi_3025 - OmpA/MotB domain protein (RefSeq), at 3,195,037 to 3,195,663
_3025
Dshi_3026: Dshi_3026 - GntR domain protein (RefSeq), at 3,195,719 to 3,196,486
_3026
Dshi_3027: Dshi_3027 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,196,549 to 3,197,109
_3027
Position (kb)
3195
3196 Strain fitness (log2 ratio)
-2
-1
0
1 at 3194.154 kb on + strand, within Dshi_3024 at 3194.160 kb on - strand, within Dshi_3024 at 3194.253 kb on - strand, within Dshi_3024 at 3194.308 kb on + strand, within Dshi_3024 at 3194.344 kb on - strand, within Dshi_3024 at 3194.428 kb on - strand, within Dshi_3024 at 3194.465 kb on + strand, within Dshi_3024 at 3194.465 kb on + strand, within Dshi_3024 at 3194.596 kb on - strand, within Dshi_3024 at 3194.639 kb on - strand, within Dshi_3024 at 3194.714 kb on - strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.756 kb on + strand, within Dshi_3024 at 3194.764 kb on - strand, within Dshi_3024 at 3194.897 kb on - strand at 3194.921 kb on + strand at 3195.035 kb on - strand at 3195.054 kb on - strand at 3195.321 kb on + strand, within Dshi_3025 at 3195.352 kb on + strand, within Dshi_3025 at 3195.357 kb on + strand, within Dshi_3025 at 3195.444 kb on - strand, within Dshi_3025 at 3195.478 kb on - strand, within Dshi_3025 at 3195.803 kb on - strand, within Dshi_3026 at 3195.903 kb on - strand, within Dshi_3026 at 3196.064 kb on + strand, within Dshi_3026 at 3196.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,194,154 + Dshi_3024 0.10 +0.1 3,194,160 - Dshi_3024 0.11 -0.1 3,194,253 - Dshi_3024 0.22 -1.1 3,194,308 + Dshi_3024 0.28 +0.3 3,194,344 - Dshi_3024 0.32 -0.3 3,194,428 - Dshi_3024 0.42 -0.8 3,194,465 + Dshi_3024 0.46 -0.6 3,194,465 + Dshi_3024 0.46 -1.1 3,194,596 - Dshi_3024 0.61 -0.4 3,194,639 - Dshi_3024 0.66 -1.8 3,194,714 - Dshi_3024 0.75 +0.1 3,194,756 + Dshi_3024 0.80 +0.1 3,194,756 + Dshi_3024 0.80 +0.1 3,194,764 - Dshi_3024 0.81 +1.6 3,194,897 - -0.9 3,194,921 + +0.7 3,195,035 - -0.0 3,195,054 - -0.0 3,195,321 + Dshi_3025 0.45 -1.3 3,195,352 + Dshi_3025 0.50 +0.1 3,195,357 + Dshi_3025 0.51 -1.6 3,195,444 - Dshi_3025 0.65 -1.5 3,195,478 - Dshi_3025 0.70 -0.2 3,195,803 - Dshi_3026 0.11 -0.1 3,195,903 - Dshi_3026 0.24 -1.4 3,196,064 + Dshi_3026 0.45 -1.0 3,196,495 - -1.2
Or see this region's nucleotide sequence