Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2913 and Dshi_2914 are separated by 54 nucleotides Dshi_2914 and Dshi_2915 are separated by 75 nucleotides Dshi_2915 and Dshi_2916 overlap by 4 nucleotides
Dshi_2913: Dshi_2913 - ABC transporter related (RefSeq), at 3,071,922 to 3,072,887
_2913
Dshi_2914: Dshi_2914 - lipase, putative (RefSeq), at 3,072,942 to 3,073,709
_2914
Dshi_2915: Dshi_2915 - NUDIX hydrolase (RefSeq), at 3,073,785 to 3,074,231
_2915
Dshi_2916: Dshi_2916 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,074,228 to 3,075,076
_2916
Position (kb)
3072
3073
3074 Strain fitness (log2 ratio)
-2
-1
0
1 at 3072.035 kb on + strand, within Dshi_2913 at 3072.149 kb on - strand, within Dshi_2913 at 3072.426 kb on - strand, within Dshi_2913 at 3072.429 kb on - strand, within Dshi_2913 at 3072.568 kb on - strand, within Dshi_2913 at 3072.616 kb on - strand, within Dshi_2913 at 3072.634 kb on - strand, within Dshi_2913 at 3072.858 kb on + strand at 3072.964 kb on + strand at 3073.091 kb on + strand, within Dshi_2914 at 3073.143 kb on - strand, within Dshi_2914 at 3073.150 kb on + strand, within Dshi_2914 at 3073.158 kb on - strand, within Dshi_2914 at 3073.269 kb on + strand at 3073.516 kb on + strand, within Dshi_2914 at 3073.562 kb on + strand, within Dshi_2914 at 3073.623 kb on - strand, within Dshi_2914 at 3073.781 kb on + strand at 3073.802 kb on - strand at 3073.802 kb on - strand at 3073.843 kb on - strand, within Dshi_2915 at 3073.893 kb on - strand, within Dshi_2915 at 3074.023 kb on + strand, within Dshi_2915 at 3074.055 kb on + strand, within Dshi_2915 at 3074.086 kb on + strand, within Dshi_2915 at 3074.248 kb on + strand at 3074.415 kb on - strand, within Dshi_2916 at 3074.465 kb on - strand, within Dshi_2916 at 3074.473 kb on + strand, within Dshi_2916 at 3074.605 kb on - strand, within Dshi_2916 at 3074.645 kb on + strand, within Dshi_2916
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 3,072,035 + Dshi_2913 0.12 -0.2 3,072,149 - Dshi_2913 0.23 +0.2 3,072,426 - Dshi_2913 0.52 +0.8 3,072,429 - Dshi_2913 0.52 -0.0 3,072,568 - Dshi_2913 0.67 -0.6 3,072,616 - Dshi_2913 0.72 -0.6 3,072,634 - Dshi_2913 0.74 +0.2 3,072,858 + -0.0 3,072,964 + -2.1 3,073,091 + Dshi_2914 0.19 -1.2 3,073,143 - Dshi_2914 0.26 -0.3 3,073,150 + Dshi_2914 0.27 -1.6 3,073,158 - Dshi_2914 0.28 -0.5 3,073,269 + +0.2 3,073,516 + Dshi_2914 0.75 -0.0 3,073,562 + Dshi_2914 0.81 -1.1 3,073,623 - Dshi_2914 0.89 -0.7 3,073,781 + +1.2 3,073,802 - -0.8 3,073,802 - -0.4 3,073,843 - Dshi_2915 0.13 +0.4 3,073,893 - Dshi_2915 0.24 -0.0 3,074,023 + Dshi_2915 0.53 -1.1 3,074,055 + Dshi_2915 0.60 -1.0 3,074,086 + Dshi_2915 0.67 -0.1 3,074,248 + -0.4 3,074,415 - Dshi_2916 0.22 -0.3 3,074,465 - Dshi_2916 0.28 -0.3 3,074,473 + Dshi_2916 0.29 +0.3 3,074,605 - Dshi_2916 0.44 +0.1 3,074,645 + Dshi_2916 0.49 -0.1
Or see this region's nucleotide sequence