Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2658 and Dshi_2659 are separated by 48 nucleotides Dshi_2659 and Dshi_2660 are separated by 73 nucleotides Dshi_2660 and Dshi_2661 are separated by 48 nucleotides
Dshi_2658: Dshi_2658 - molybdopterin dehydrogenase FAD-binding (RefSeq), at 2,814,514 to 2,815,302
_2658
Dshi_2659: Dshi_2659 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 2,815,351 to 2,817,726
_2659
Dshi_2660: Dshi_2660 - (2Fe-2S)-binding domain protein (RefSeq), at 2,817,800 to 2,818,288
_2660
Dshi_2661: Dshi_2661 - carbon monoxide dehydrogenase subunit G (RefSeq), at 2,818,337 to 2,818,867
_2661
Position (kb)
2815
2816
2817
2818 Strain fitness (log2 ratio)
-1
0
1 at 2814.377 kb on + strand at 2814.422 kb on - strand at 2814.423 kb on - strand at 2814.427 kb on - strand at 2814.428 kb on - strand at 2814.456 kb on - strand at 2814.520 kb on - strand at 2814.545 kb on + strand at 2814.550 kb on + strand at 2814.553 kb on - strand at 2814.926 kb on - strand, within Dshi_2658 at 2814.954 kb on - strand, within Dshi_2658 at 2815.109 kb on + strand, within Dshi_2658 at 2815.121 kb on - strand, within Dshi_2658 at 2815.322 kb on - strand at 2815.345 kb on - strand at 2815.365 kb on - strand at 2815.422 kb on + strand at 2815.500 kb on + strand at 2815.523 kb on - strand at 2815.550 kb on + strand at 2815.585 kb on + strand at 2815.612 kb on - strand, within Dshi_2659 at 2815.671 kb on - strand, within Dshi_2659 at 2815.759 kb on - strand, within Dshi_2659 at 2815.799 kb on - strand, within Dshi_2659 at 2815.853 kb on - strand, within Dshi_2659 at 2816.207 kb on - strand, within Dshi_2659 at 2816.403 kb on + strand, within Dshi_2659 at 2816.491 kb on - strand, within Dshi_2659 at 2816.496 kb on + strand, within Dshi_2659 at 2816.706 kb on + strand, within Dshi_2659 at 2817.059 kb on + strand, within Dshi_2659 at 2817.059 kb on + strand, within Dshi_2659 at 2817.061 kb on + strand, within Dshi_2659 at 2817.084 kb on - strand, within Dshi_2659 at 2817.128 kb on - strand, within Dshi_2659 at 2817.161 kb on - strand, within Dshi_2659 at 2817.275 kb on + strand, within Dshi_2659 at 2817.275 kb on + strand, within Dshi_2659 at 2817.306 kb on - strand, within Dshi_2659 at 2817.358 kb on - strand, within Dshi_2659 at 2817.368 kb on - strand, within Dshi_2659 at 2817.369 kb on - strand, within Dshi_2659 at 2817.444 kb on + strand, within Dshi_2659 at 2817.580 kb on - strand at 2817.640 kb on - strand at 2817.735 kb on + strand at 2817.751 kb on + strand at 2817.947 kb on - strand, within Dshi_2660 at 2818.083 kb on - strand, within Dshi_2660 at 2818.097 kb on + strand, within Dshi_2660 at 2818.112 kb on + strand, within Dshi_2660 at 2818.172 kb on + strand, within Dshi_2660 at 2818.208 kb on - strand, within Dshi_2660 at 2818.242 kb on - strand at 2818.253 kb on + strand at 2818.401 kb on + strand, within Dshi_2661 at 2818.574 kb on - strand, within Dshi_2661 at 2818.575 kb on + strand, within Dshi_2661 at 2818.612 kb on - strand, within Dshi_2661 at 2818.677 kb on - strand, within Dshi_2661
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 2,814,377 + +1.6 2,814,422 - -0.2 2,814,423 - +0.0 2,814,427 - -0.7 2,814,428 - -0.3 2,814,456 - -0.2 2,814,520 - -0.1 2,814,545 + +0.2 2,814,550 + +0.3 2,814,553 - -0.0 2,814,926 - Dshi_2658 0.52 -0.4 2,814,954 - Dshi_2658 0.56 +0.1 2,815,109 + Dshi_2658 0.75 +0.1 2,815,121 - Dshi_2658 0.77 +0.6 2,815,322 - +0.9 2,815,345 - +0.4 2,815,365 - -0.2 2,815,422 + -0.0 2,815,500 + -0.6 2,815,523 - -0.6 2,815,550 + -0.3 2,815,585 + +0.2 2,815,612 - Dshi_2659 0.11 -0.5 2,815,671 - Dshi_2659 0.13 -0.1 2,815,759 - Dshi_2659 0.17 -1.2 2,815,799 - Dshi_2659 0.19 -0.6 2,815,853 - Dshi_2659 0.21 -0.8 2,816,207 - Dshi_2659 0.36 -0.8 2,816,403 + Dshi_2659 0.44 +0.2 2,816,491 - Dshi_2659 0.48 +0.4 2,816,496 + Dshi_2659 0.48 -1.1 2,816,706 + Dshi_2659 0.57 -0.8 2,817,059 + Dshi_2659 0.72 +0.9 2,817,059 + Dshi_2659 0.72 -0.7 2,817,061 + Dshi_2659 0.72 +0.6 2,817,084 - Dshi_2659 0.73 +0.5 2,817,128 - Dshi_2659 0.75 +0.2 2,817,161 - Dshi_2659 0.76 -0.6 2,817,275 + Dshi_2659 0.81 +0.2 2,817,275 + Dshi_2659 0.81 +0.3 2,817,306 - Dshi_2659 0.82 +0.2 2,817,358 - Dshi_2659 0.84 +0.0 2,817,368 - Dshi_2659 0.85 -0.6 2,817,369 - Dshi_2659 0.85 -0.7 2,817,444 + Dshi_2659 0.88 -0.2 2,817,580 - +0.2 2,817,640 - +1.2 2,817,735 + -0.3 2,817,751 + -0.4 2,817,947 - Dshi_2660 0.30 -0.1 2,818,083 - Dshi_2660 0.58 +0.2 2,818,097 + Dshi_2660 0.61 +0.9 2,818,112 + Dshi_2660 0.64 +0.2 2,818,172 + Dshi_2660 0.76 +1.0 2,818,208 - Dshi_2660 0.83 +0.3 2,818,242 - +1.6 2,818,253 + +0.7 2,818,401 + Dshi_2661 0.12 +0.8 2,818,574 - Dshi_2661 0.45 +0.0 2,818,575 + Dshi_2661 0.45 -0.7 2,818,612 - Dshi_2661 0.52 +0.2 2,818,677 - Dshi_2661 0.64 -0.3
Or see this region's nucleotide sequence