Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2334 and Dshi_2335 are separated by 227 nucleotides Dshi_2335 and Dshi_2336 are separated by 77 nucleotides Dshi_2336 and Dshi_2337 are separated by 39 nucleotides
Dshi_2334: Dshi_2334 - fumarate hydratase, class II (RefSeq), at 2,463,610 to 2,465,007
_2334
Dshi_2335: Dshi_2335 - arylsulfate sulfotransferase-like protein (RefSeq), at 2,465,235 to 2,465,534
_2335
Dshi_2336: Dshi_2336 - hypothetical protein (RefSeq), at 2,465,612 to 2,465,803
_2336
Dshi_2337: Dshi_2337 - cytochrome P450 (RefSeq), at 2,465,843 to 2,467,219
_2337
Position (kb)
2465
2466 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2465.027 kb on + strand at 2465.344 kb on + strand, within Dshi_2335 at 2465.398 kb on - strand, within Dshi_2335 at 2465.549 kb on - strand at 2465.568 kb on - strand at 2465.741 kb on + strand, within Dshi_2336 at 2465.749 kb on - strand, within Dshi_2336 at 2465.798 kb on - strand at 2465.875 kb on + strand at 2466.048 kb on - strand, within Dshi_2337 at 2466.122 kb on - strand, within Dshi_2337 at 2466.300 kb on - strand, within Dshi_2337 at 2466.495 kb on + strand, within Dshi_2337 at 2466.688 kb on - strand, within Dshi_2337
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 2,465,027 + +0.1 2,465,344 + Dshi_2335 0.36 +0.9 2,465,398 - Dshi_2335 0.54 +1.1 2,465,549 - -0.2 2,465,568 - -0.8 2,465,741 + Dshi_2336 0.67 -0.3 2,465,749 - Dshi_2336 0.71 -1.8 2,465,798 - -0.0 2,465,875 + +0.4 2,466,048 - Dshi_2337 0.15 -1.0 2,466,122 - Dshi_2337 0.20 -0.5 2,466,300 - Dshi_2337 0.33 +2.5 2,466,495 + Dshi_2337 0.47 -0.2 2,466,688 - Dshi_2337 0.61 -1.6
Or see this region's nucleotide sequence