Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2050 and Dshi_2051 are separated by 105 nucleotides Dshi_2051 and Dshi_2052 overlap by 4 nucleotides Dshi_2052 and Dshi_2053 are separated by 779 nucleotides
Dshi_2050: Dshi_2050 - protein of unknown function DUF140 (RefSeq), at 2,170,309 to 2,171,463
_2050
Dshi_2051: Dshi_2051 - hypothetical protein (RefSeq), at 2,171,569 to 2,172,045
_2051
Dshi_2052: Dshi_2052 - hypothetical protein (RefSeq), at 2,172,042 to 2,172,206
_2052
Dshi_2053: Dshi_2053 - hypothetical protein (RefSeq), at 2,172,986 to 2,173,456
_2053
Position (kb)
2171
2172
2173 Strain fitness (log2 ratio)
-2
-1
0
1 at 2170.591 kb on - strand, within Dshi_2050 at 2170.636 kb on + strand, within Dshi_2050 at 2170.758 kb on - strand, within Dshi_2050 at 2170.793 kb on + strand, within Dshi_2050 at 2170.924 kb on + strand, within Dshi_2050 at 2170.931 kb on + strand, within Dshi_2050 at 2170.931 kb on + strand, within Dshi_2050 at 2171.007 kb on - strand, within Dshi_2050 at 2171.017 kb on - strand, within Dshi_2050 at 2171.017 kb on - strand, within Dshi_2050 at 2171.073 kb on - strand, within Dshi_2050 at 2171.119 kb on - strand, within Dshi_2050 at 2171.240 kb on + strand, within Dshi_2050 at 2171.272 kb on - strand, within Dshi_2050 at 2171.274 kb on + strand, within Dshi_2050 at 2171.479 kb on - strand at 2171.479 kb on - strand at 2171.503 kb on - strand at 2171.508 kb on - strand at 2171.532 kb on - strand at 2171.541 kb on + strand at 2171.549 kb on - strand at 2171.739 kb on - strand, within Dshi_2051 at 2171.762 kb on + strand, within Dshi_2051 at 2171.775 kb on - strand, within Dshi_2051 at 2171.798 kb on + strand, within Dshi_2051 at 2171.802 kb on - strand, within Dshi_2051 at 2171.843 kb on - strand, within Dshi_2051 at 2171.863 kb on + strand, within Dshi_2051 at 2171.889 kb on + strand, within Dshi_2051 at 2171.891 kb on - strand, within Dshi_2051 at 2171.912 kb on + strand, within Dshi_2051 at 2172.085 kb on + strand, within Dshi_2052 at 2172.103 kb on + strand, within Dshi_2052 at 2172.204 kb on - strand at 2172.211 kb on - strand at 2172.262 kb on + strand at 2172.317 kb on + strand at 2172.335 kb on - strand at 2172.368 kb on - strand at 2172.483 kb on - strand at 2172.542 kb on + strand at 2172.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 2,170,591 - Dshi_2050 0.24 +0.2 2,170,636 + Dshi_2050 0.28 -0.1 2,170,758 - Dshi_2050 0.39 -0.3 2,170,793 + Dshi_2050 0.42 -0.3 2,170,924 + Dshi_2050 0.53 -0.5 2,170,931 + Dshi_2050 0.54 -0.5 2,170,931 + Dshi_2050 0.54 -1.0 2,171,007 - Dshi_2050 0.60 -0.2 2,171,017 - Dshi_2050 0.61 -0.4 2,171,017 - Dshi_2050 0.61 -0.1 2,171,073 - Dshi_2050 0.66 -0.6 2,171,119 - Dshi_2050 0.70 +0.0 2,171,240 + Dshi_2050 0.81 +0.5 2,171,272 - Dshi_2050 0.83 +0.0 2,171,274 + Dshi_2050 0.84 -0.7 2,171,479 - -0.6 2,171,479 - -0.5 2,171,503 - -0.6 2,171,508 - -0.9 2,171,532 - -0.1 2,171,541 + -0.6 2,171,549 - +0.1 2,171,739 - Dshi_2051 0.36 +0.2 2,171,762 + Dshi_2051 0.40 -0.2 2,171,775 - Dshi_2051 0.43 -1.0 2,171,798 + Dshi_2051 0.48 -0.2 2,171,802 - Dshi_2051 0.49 -0.7 2,171,843 - Dshi_2051 0.57 -1.6 2,171,863 + Dshi_2051 0.62 +0.3 2,171,889 + Dshi_2051 0.67 +0.6 2,171,891 - Dshi_2051 0.68 -0.4 2,171,912 + Dshi_2051 0.72 +0.1 2,172,085 + Dshi_2052 0.26 -0.3 2,172,103 + Dshi_2052 0.37 -0.2 2,172,204 - +0.5 2,172,211 - -1.8 2,172,262 + -1.1 2,172,317 + -0.0 2,172,335 - +0.3 2,172,368 - -0.5 2,172,483 - +0.1 2,172,542 + -0.3 2,172,544 + -0.1
Or see this region's nucleotide sequence