Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2027

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2025 and Dshi_2026 are separated by 61 nucleotidesDshi_2026 and Dshi_2027 overlap by 4 nucleotidesDshi_2027 and Dshi_2028 overlap by 4 nucleotides Dshi_2025: Dshi_2025 - protein of unknown function DUF1498 (RefSeq), at 2,145,522 to 2,146,214 _2025 Dshi_2026: Dshi_2026 - LamB/YcsF family protein (RefSeq), at 2,146,276 to 2,147,046 _2026 Dshi_2027: Dshi_2027 - Allophanate hydrolase subunit 2 (RefSeq), at 2,147,043 to 2,148,059 _2027 Dshi_2028: Dshi_2028 - Allophanate hydrolase subunit 1 (RefSeq), at 2,148,056 to 2,148,793 _2028 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -2 -1 0 1at 2146.326 kb on - strandat 2146.342 kb on + strandat 2146.355 kb on + strand, within Dshi_2026at 2146.385 kb on - strand, within Dshi_2026at 2146.436 kb on + strand, within Dshi_2026at 2146.436 kb on + strand, within Dshi_2026at 2146.599 kb on - strand, within Dshi_2026at 2146.621 kb on - strand, within Dshi_2026at 2146.658 kb on - strand, within Dshi_2026at 2146.761 kb on - strand, within Dshi_2026at 2146.849 kb on + strand, within Dshi_2026at 2146.969 kb on - strand, within Dshi_2026at 2146.974 kb on - strandat 2147.053 kb on + strandat 2147.099 kb on + strandat 2147.246 kb on - strand, within Dshi_2027at 2147.265 kb on + strand, within Dshi_2027at 2147.645 kb on + strand, within Dshi_2027at 2147.650 kb on + strand, within Dshi_2027at 2147.676 kb on + strand, within Dshi_2027at 2147.679 kb on + strand, within Dshi_2027at 2147.689 kb on - strand, within Dshi_2027at 2147.942 kb on + strand, within Dshi_2027at 2148.164 kb on + strand, within Dshi_2028at 2148.232 kb on - strand, within Dshi_2028at 2148.328 kb on + strand, within Dshi_2028at 2148.441 kb on + strand, within Dshi_2028at 2148.512 kb on - strand, within Dshi_2028at 2148.535 kb on - strand, within Dshi_2028at 2148.594 kb on - strand, within Dshi_2028at 2148.609 kb on - strand, within Dshi_2028at 2148.847 kb on - strandat 2148.870 kb on + strandat 2148.934 kb on + strandat 2148.942 kb on - strandat 2148.984 kb on + strandat 2148.992 kb on - strandat 2149.013 kb on - strandat 2149.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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2,146,326 - -1.5
2,146,342 + -1.0
2,146,355 + Dshi_2026 0.10 -1.7
2,146,385 - Dshi_2026 0.14 -0.6
2,146,436 + Dshi_2026 0.21 -0.8
2,146,436 + Dshi_2026 0.21 -0.8
2,146,599 - Dshi_2026 0.42 -0.4
2,146,621 - Dshi_2026 0.45 -0.7
2,146,658 - Dshi_2026 0.50 -1.0
2,146,761 - Dshi_2026 0.63 -0.3
2,146,849 + Dshi_2026 0.74 -0.3
2,146,969 - Dshi_2026 0.90 -0.4
2,146,974 - -0.4
2,147,053 + -0.3
2,147,099 + -0.5
2,147,246 - Dshi_2027 0.20 -0.6
2,147,265 + Dshi_2027 0.22 +0.1
2,147,645 + Dshi_2027 0.59 -0.5
2,147,650 + Dshi_2027 0.60 -0.9
2,147,676 + Dshi_2027 0.62 -0.4
2,147,679 + Dshi_2027 0.63 -0.3
2,147,689 - Dshi_2027 0.64 -1.5
2,147,942 + Dshi_2027 0.88 -0.3
2,148,164 + Dshi_2028 0.15 -0.3
2,148,232 - Dshi_2028 0.24 +0.1
2,148,328 + Dshi_2028 0.37 -0.4
2,148,441 + Dshi_2028 0.52 +1.4
2,148,512 - Dshi_2028 0.62 -0.1
2,148,535 - Dshi_2028 0.65 -0.8
2,148,594 - Dshi_2028 0.73 -0.7
2,148,609 - Dshi_2028 0.75 -2.5
2,148,847 - +0.4
2,148,870 + +0.2
2,148,934 + +0.1
2,148,942 - -0.6
2,148,984 + +0.3
2,148,992 - -0.4
2,149,013 - -0.6
2,149,013 - -0.4

Or see this region's nucleotide sequence