Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2025 and Dshi_2026 are separated by 61 nucleotides Dshi_2026 and Dshi_2027 overlap by 4 nucleotides Dshi_2027 and Dshi_2028 overlap by 4 nucleotides
Dshi_2025: Dshi_2025 - protein of unknown function DUF1498 (RefSeq), at 2,145,522 to 2,146,214
_2025
Dshi_2026: Dshi_2026 - LamB/YcsF family protein (RefSeq), at 2,146,276 to 2,147,046
_2026
Dshi_2027: Dshi_2027 - Allophanate hydrolase subunit 2 (RefSeq), at 2,147,043 to 2,148,059
_2027
Dshi_2028: Dshi_2028 - Allophanate hydrolase subunit 1 (RefSeq), at 2,148,056 to 2,148,793
_2028
Position (kb)
2147
2148
2149 Strain fitness (log2 ratio)
-2
-1
0
1 at 2146.326 kb on - strand at 2146.342 kb on + strand at 2146.355 kb on + strand, within Dshi_2026 at 2146.385 kb on - strand, within Dshi_2026 at 2146.436 kb on + strand, within Dshi_2026 at 2146.436 kb on + strand, within Dshi_2026 at 2146.599 kb on - strand, within Dshi_2026 at 2146.621 kb on - strand, within Dshi_2026 at 2146.658 kb on - strand, within Dshi_2026 at 2146.761 kb on - strand, within Dshi_2026 at 2146.849 kb on + strand, within Dshi_2026 at 2146.969 kb on - strand, within Dshi_2026 at 2146.974 kb on - strand at 2147.053 kb on + strand at 2147.099 kb on + strand at 2147.246 kb on - strand, within Dshi_2027 at 2147.265 kb on + strand, within Dshi_2027 at 2147.645 kb on + strand, within Dshi_2027 at 2147.650 kb on + strand, within Dshi_2027 at 2147.676 kb on + strand, within Dshi_2027 at 2147.679 kb on + strand, within Dshi_2027 at 2147.689 kb on - strand, within Dshi_2027 at 2147.942 kb on + strand, within Dshi_2027 at 2148.164 kb on + strand, within Dshi_2028 at 2148.232 kb on - strand, within Dshi_2028 at 2148.328 kb on + strand, within Dshi_2028 at 2148.441 kb on + strand, within Dshi_2028 at 2148.512 kb on - strand, within Dshi_2028 at 2148.535 kb on - strand, within Dshi_2028 at 2148.594 kb on - strand, within Dshi_2028 at 2148.609 kb on - strand, within Dshi_2028 at 2148.847 kb on - strand at 2148.870 kb on + strand at 2148.934 kb on + strand at 2148.942 kb on - strand at 2148.984 kb on + strand at 2148.992 kb on - strand at 2149.013 kb on - strand at 2149.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 2,146,326 - -1.5 2,146,342 + -1.0 2,146,355 + Dshi_2026 0.10 -1.7 2,146,385 - Dshi_2026 0.14 -0.6 2,146,436 + Dshi_2026 0.21 -0.8 2,146,436 + Dshi_2026 0.21 -0.8 2,146,599 - Dshi_2026 0.42 -0.4 2,146,621 - Dshi_2026 0.45 -0.7 2,146,658 - Dshi_2026 0.50 -1.0 2,146,761 - Dshi_2026 0.63 -0.3 2,146,849 + Dshi_2026 0.74 -0.3 2,146,969 - Dshi_2026 0.90 -0.4 2,146,974 - -0.4 2,147,053 + -0.3 2,147,099 + -0.5 2,147,246 - Dshi_2027 0.20 -0.6 2,147,265 + Dshi_2027 0.22 +0.1 2,147,645 + Dshi_2027 0.59 -0.5 2,147,650 + Dshi_2027 0.60 -0.9 2,147,676 + Dshi_2027 0.62 -0.4 2,147,679 + Dshi_2027 0.63 -0.3 2,147,689 - Dshi_2027 0.64 -1.5 2,147,942 + Dshi_2027 0.88 -0.3 2,148,164 + Dshi_2028 0.15 -0.3 2,148,232 - Dshi_2028 0.24 +0.1 2,148,328 + Dshi_2028 0.37 -0.4 2,148,441 + Dshi_2028 0.52 +1.4 2,148,512 - Dshi_2028 0.62 -0.1 2,148,535 - Dshi_2028 0.65 -0.8 2,148,594 - Dshi_2028 0.73 -0.7 2,148,609 - Dshi_2028 0.75 -2.5 2,148,847 - +0.4 2,148,870 + +0.2 2,148,934 + +0.1 2,148,942 - -0.6 2,148,984 + +0.3 2,148,992 - -0.4 2,149,013 - -0.6 2,149,013 - -0.4
Or see this region's nucleotide sequence