Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1556 and Dshi_1557 overlap by 14 nucleotides Dshi_1557 and Dshi_1558 overlap by 34 nucleotides Dshi_1558 and Dshi_1559 are separated by 115 nucleotides
Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435
_1556
Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090
_1557
Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377
_1558
Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701
_1559
Position (kb)
1619
1620
1621 Strain fitness (log2 ratio)
-1
0
1 at 1618.428 kb on - strand, within Dshi_1556 at 1618.430 kb on + strand, within Dshi_1556 at 1618.713 kb on + strand, within Dshi_1556 at 1618.878 kb on + strand, within Dshi_1556 at 1618.886 kb on - strand, within Dshi_1556 at 1618.939 kb on + strand, within Dshi_1556 at 1619.104 kb on + strand, within Dshi_1556 at 1619.104 kb on + strand, within Dshi_1556 at 1619.233 kb on + strand, within Dshi_1556 at 1619.692 kb on + strand, within Dshi_1557 at 1619.752 kb on - strand, within Dshi_1557 at 1620.354 kb on + strand at 1620.374 kb on + strand at 1620.505 kb on + strand at 1620.651 kb on - strand, within Dshi_1559 at 1620.768 kb on + strand, within Dshi_1559 at 1620.843 kb on + strand, within Dshi_1559 at 1620.878 kb on - strand, within Dshi_1559 at 1620.878 kb on - strand, within Dshi_1559
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,618,428 - Dshi_1556 0.35 -0.1 1,618,430 + Dshi_1556 0.36 -1.2 1,618,713 + Dshi_1556 0.54 +0.4 1,618,878 + Dshi_1556 0.64 -0.9 1,618,886 - Dshi_1556 0.65 -0.2 1,618,939 + Dshi_1556 0.68 +0.9 1,619,104 + Dshi_1556 0.79 -1.1 1,619,104 + Dshi_1556 0.79 +0.7 1,619,233 + Dshi_1556 0.87 -0.3 1,619,692 + Dshi_1557 0.40 -1.2 1,619,752 - Dshi_1557 0.49 +1.0 1,620,354 + -1.4 1,620,374 + -0.1 1,620,505 + -0.2 1,620,651 - Dshi_1559 0.13 -0.3 1,620,768 + Dshi_1559 0.23 -1.4 1,620,843 + Dshi_1559 0.29 -0.6 1,620,878 - Dshi_1559 0.32 -0.0 1,620,878 - Dshi_1559 0.32 +0.4
Or see this region's nucleotide sequence