Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1480 and Dshi_1481 are separated by 185 nucleotides Dshi_1481 and Dshi_1482 overlap by 4 nucleotides Dshi_1482 and Dshi_R0028 are separated by 51 nucleotides Dshi_R0028 and Dshi_1483 are separated by 43 nucleotides Dshi_1483 and Dshi_1484 are separated by 163 nucleotides
Dshi_1480: Dshi_1480 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,535,034 to 1,536,077
_1480
Dshi_1481: Dshi_1481 - hypothetical protein (RefSeq), at 1,536,263 to 1,536,844
_1481
Dshi_1482: Dshi_1482 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,536,841 to 1,538,193
_1482
Dshi_R0028: Dshi_R0028 - tRNA-Leu (RefSeq), at 1,538,245 to 1,538,331
_R0028
Dshi_1483: Dshi_1483 - hypothetical protein (RefSeq), at 1,538,375 to 1,538,743
_1483
Dshi_1484: Dshi_1484 - hypothetical protein (RefSeq), at 1,538,907 to 1,539,512
_1484
Position (kb)
1536
1537
1538
1539 Strain fitness (log2 ratio)
-1
0
1 at 1535.851 kb on - strand, within Dshi_1480 at 1535.890 kb on - strand, within Dshi_1480 at 1535.979 kb on + strand at 1535.987 kb on - strand at 1536.033 kb on - strand at 1536.084 kb on + strand at 1536.161 kb on + strand at 1536.218 kb on - strand at 1536.282 kb on - strand at 1536.320 kb on + strand at 1536.754 kb on + strand, within Dshi_1481 at 1536.794 kb on + strand at 1536.848 kb on + strand at 1537.123 kb on - strand, within Dshi_1482 at 1537.178 kb on - strand, within Dshi_1482 at 1537.542 kb on + strand, within Dshi_1482 at 1537.553 kb on + strand, within Dshi_1482 at 1537.840 kb on - strand, within Dshi_1482 at 1537.966 kb on - strand, within Dshi_1482 at 1538.091 kb on - strand at 1538.384 kb on + strand at 1538.669 kb on - strand, within Dshi_1483 at 1539.008 kb on - strand, within Dshi_1484 at 1539.146 kb on + strand, within Dshi_1484
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,535,851 - Dshi_1480 0.78 -0.2 1,535,890 - Dshi_1480 0.82 -0.5 1,535,979 + -0.3 1,535,987 - -0.2 1,536,033 - -0.4 1,536,084 + -0.3 1,536,161 + -0.4 1,536,218 - -1.3 1,536,282 - +0.2 1,536,320 + -1.3 1,536,754 + Dshi_1481 0.84 -0.7 1,536,794 + +0.5 1,536,848 + -0.0 1,537,123 - Dshi_1482 0.21 -0.4 1,537,178 - Dshi_1482 0.25 -1.5 1,537,542 + Dshi_1482 0.52 -0.1 1,537,553 + Dshi_1482 0.53 -0.6 1,537,840 - Dshi_1482 0.74 -0.6 1,537,966 - Dshi_1482 0.83 -0.7 1,538,091 - -0.2 1,538,384 + -0.2 1,538,669 - Dshi_1483 0.80 +0.4 1,539,008 - Dshi_1484 0.17 +1.3 1,539,146 + Dshi_1484 0.39 +0.4
Or see this region's nucleotide sequence