Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1478

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1476 and Dshi_1477 are separated by 191 nucleotidesDshi_1477 and Dshi_1478 are separated by 127 nucleotidesDshi_1478 and Dshi_1479 are separated by 78 nucleotides Dshi_1476: Dshi_1476 - DNA gyrase, A subunit (RefSeq), at 1,530,153 to 1,532,894 _1476 Dshi_1477: Dshi_1477 - Usg family protein (RefSeq), at 1,533,086 to 1,533,355 _1477 Dshi_1478: Dshi_1478 - Disulphide bond formation protein DsbB (RefSeq), at 1,533,483 to 1,533,950 _1478 Dshi_1479: Dshi_1479 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,534,029 to 1,534,640 _1479 Position (kb) 1533 1534Strain fitness (log2 ratio) -1 0 1at 1533.090 kb on + strandat 1533.120 kb on + strand, within Dshi_1477at 1533.125 kb on + strand, within Dshi_1477at 1533.153 kb on - strand, within Dshi_1477at 1533.165 kb on + strand, within Dshi_1477at 1533.556 kb on - strand, within Dshi_1478at 1533.710 kb on - strand, within Dshi_1478at 1533.827 kb on - strand, within Dshi_1478at 1534.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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1,533,090 + -0.4
1,533,120 + Dshi_1477 0.13 -0.7
1,533,125 + Dshi_1477 0.14 +0.3
1,533,153 - Dshi_1477 0.25 +1.1
1,533,165 + Dshi_1477 0.29 -1.5
1,533,556 - Dshi_1478 0.16 -1.2
1,533,710 - Dshi_1478 0.49 -0.0
1,533,827 - Dshi_1478 0.74 -0.0
1,534,735 - -0.8

Or see this region's nucleotide sequence