Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1386 and Dshi_1387 are separated by 144 nucleotides Dshi_1387 and Dshi_1388 are separated by 207 nucleotides
Dshi_1386: Dshi_1386 - hypothetical protein (RefSeq), at 1,438,996 to 1,440,408
_1386
Dshi_1387: Dshi_1387 - ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq), at 1,440,553 to 1,441,812
_1387
Dshi_1388: Dshi_1388 - Endopeptidase Clp (RefSeq), at 1,442,020 to 1,442,646
_1388
Position (kb)
1440
1441
1442 Strain fitness (log2 ratio)
-2
-1
0
1 at 1439.615 kb on - strand, within Dshi_1386 at 1439.626 kb on - strand, within Dshi_1386 at 1439.801 kb on - strand, within Dshi_1386 at 1439.895 kb on + strand, within Dshi_1386 at 1439.902 kb on + strand, within Dshi_1386 at 1439.918 kb on + strand, within Dshi_1386 at 1439.951 kb on + strand, within Dshi_1386 at 1440.035 kb on - strand, within Dshi_1386 at 1440.038 kb on + strand, within Dshi_1386 at 1440.333 kb on + strand at 1440.333 kb on + strand at 1440.341 kb on - strand at 1440.341 kb on - strand at 1440.368 kb on - strand at 1440.422 kb on + strand at 1440.430 kb on - strand at 1440.590 kb on - strand at 1441.519 kb on + strand, within Dshi_1387 at 1441.527 kb on - strand, within Dshi_1387 at 1441.727 kb on + strand at 1441.981 kb on + strand at 1441.989 kb on - strand at 1441.991 kb on + strand at 1442.080 kb on - strand at 1442.697 kb on + strand at 1442.721 kb on + strand at 1442.729 kb on - strand at 1442.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,439,615 - Dshi_1386 0.44 -1.1 1,439,626 - Dshi_1386 0.45 +0.6 1,439,801 - Dshi_1386 0.57 -0.2 1,439,895 + Dshi_1386 0.64 -0.5 1,439,902 + Dshi_1386 0.64 -0.4 1,439,918 + Dshi_1386 0.65 +0.3 1,439,951 + Dshi_1386 0.68 +0.7 1,440,035 - Dshi_1386 0.74 +0.1 1,440,038 + Dshi_1386 0.74 +0.0 1,440,333 + -0.5 1,440,333 + -2.1 1,440,341 - -0.1 1,440,341 - -0.0 1,440,368 - -0.7 1,440,422 + +0.3 1,440,430 - -0.5 1,440,590 - -0.0 1,441,519 + Dshi_1387 0.77 -1.0 1,441,527 - Dshi_1387 0.77 -0.6 1,441,727 + -0.2 1,441,981 + +0.6 1,441,989 - +0.2 1,441,991 + -0.0 1,442,080 - +1.1 1,442,697 + -0.5 1,442,721 + +0.1 1,442,729 - -0.4 1,442,785 - -0.2
Or see this region's nucleotide sequence