Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1375 and Dshi_1376 are separated by 56 nucleotides Dshi_1376 and Dshi_1377 overlap by 8 nucleotides Dshi_1377 and Dshi_1378 overlap by 1 nucleotides
Dshi_1375: Dshi_1375 - Ornithine decarboxylase (RefSeq), at 1,428,663 to 1,429,859
_1375
Dshi_1376: Dshi_1376 - Creatininase (RefSeq), at 1,429,916 to 1,430,713
_1376
Dshi_1377: Dshi_1377 - 2OG-Fe(II) oxygenase (RefSeq), at 1,430,706 to 1,431,608
_1377
Dshi_1378: Dshi_1378 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 1,431,608 to 1,432,243
_1378
Position (kb)
1429
1430
1431 Strain fitness (log2 ratio)
-2
-1
0
1 at 1429.153 kb on - strand, within Dshi_1375 at 1429.231 kb on + strand, within Dshi_1375 at 1429.648 kb on + strand, within Dshi_1375 at 1429.954 kb on - strand at 1430.128 kb on + strand, within Dshi_1376 at 1430.169 kb on + strand, within Dshi_1376 at 1430.172 kb on - strand, within Dshi_1376 at 1430.879 kb on + strand, within Dshi_1377 at 1430.886 kb on + strand, within Dshi_1377 at 1430.966 kb on + strand, within Dshi_1377 at 1431.002 kb on - strand, within Dshi_1377 at 1431.157 kb on - strand, within Dshi_1377 at 1431.170 kb on + strand, within Dshi_1377 at 1431.385 kb on + strand, within Dshi_1377 at 1431.385 kb on + strand, within Dshi_1377 at 1431.393 kb on - strand, within Dshi_1377 at 1431.538 kb on + strand at 1431.551 kb on - strand at 1431.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,429,153 - Dshi_1375 0.41 -0.9 1,429,231 + Dshi_1375 0.47 -0.6 1,429,648 + Dshi_1375 0.82 +0.5 1,429,954 - -2.3 1,430,128 + Dshi_1376 0.27 -0.8 1,430,169 + Dshi_1376 0.32 -0.4 1,430,172 - Dshi_1376 0.32 -0.4 1,430,879 + Dshi_1377 0.19 -2.2 1,430,886 + Dshi_1377 0.20 -0.2 1,430,966 + Dshi_1377 0.29 +0.8 1,431,002 - Dshi_1377 0.33 -0.0 1,431,157 - Dshi_1377 0.50 +0.5 1,431,170 + Dshi_1377 0.51 +0.2 1,431,385 + Dshi_1377 0.75 -0.5 1,431,385 + Dshi_1377 0.75 -0.5 1,431,393 - Dshi_1377 0.76 -1.0 1,431,538 + -0.2 1,431,551 - -0.0 1,431,625 + -0.7
Or see this region's nucleotide sequence