Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1216 and Dshi_1217 are separated by 102 nucleotides Dshi_1217 and Dshi_1218 are separated by 96 nucleotides
Dshi_1216: Dshi_1216 - 2-dehydropantoate 2-reductase (RefSeq), at 1,255,823 to 1,256,800
_1216
Dshi_1217: Dshi_1217 - AMP-dependent synthetase and ligase (RefSeq), at 1,256,903 to 1,258,444
_1217
Dshi_1218: Dshi_1218 - protein of unknown function DUF112 transmembrane (RefSeq), at 1,258,541 to 1,260,055
_1218
Position (kb)
1256
1257
1258
1259 Strain fitness (log2 ratio)
-2
-1
0
1 at 1256.955 kb on + strand at 1257.135 kb on - strand, within Dshi_1217 at 1257.219 kb on + strand, within Dshi_1217 at 1257.392 kb on - strand, within Dshi_1217 at 1257.421 kb on - strand, within Dshi_1217 at 1257.421 kb on - strand, within Dshi_1217 at 1257.665 kb on + strand, within Dshi_1217 at 1257.665 kb on + strand, within Dshi_1217 at 1257.854 kb on + strand, within Dshi_1217 at 1257.938 kb on - strand, within Dshi_1217 at 1258.033 kb on + strand, within Dshi_1217 at 1258.094 kb on + strand, within Dshi_1217 at 1258.423 kb on + strand at 1258.456 kb on - strand at 1258.507 kb on - strand at 1258.621 kb on + strand at 1258.631 kb on + strand at 1258.667 kb on + strand at 1258.680 kb on + strand at 1258.784 kb on + strand, within Dshi_1218 at 1258.866 kb on + strand, within Dshi_1218 at 1258.884 kb on - strand, within Dshi_1218 at 1258.943 kb on + strand, within Dshi_1218 at 1258.958 kb on - strand, within Dshi_1218 at 1258.958 kb on - strand, within Dshi_1218 at 1259.211 kb on + strand, within Dshi_1218 at 1259.229 kb on - strand, within Dshi_1218 at 1259.275 kb on + strand, within Dshi_1218 at 1259.418 kb on - strand, within Dshi_1218
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,256,955 + -0.1 1,257,135 - Dshi_1217 0.15 -0.3 1,257,219 + Dshi_1217 0.20 -2.1 1,257,392 - Dshi_1217 0.32 -1.2 1,257,421 - Dshi_1217 0.34 -1.0 1,257,421 - Dshi_1217 0.34 -1.7 1,257,665 + Dshi_1217 0.49 -0.6 1,257,665 + Dshi_1217 0.49 -0.2 1,257,854 + Dshi_1217 0.62 -0.1 1,257,938 - Dshi_1217 0.67 +0.0 1,258,033 + Dshi_1217 0.73 -0.9 1,258,094 + Dshi_1217 0.77 -0.1 1,258,423 + -1.3 1,258,456 - +0.0 1,258,507 - -0.4 1,258,621 + -0.3 1,258,631 + -0.2 1,258,667 + +0.0 1,258,680 + +0.1 1,258,784 + Dshi_1218 0.16 +0.3 1,258,866 + Dshi_1218 0.21 +0.7 1,258,884 - Dshi_1218 0.23 -0.8 1,258,943 + Dshi_1218 0.27 -0.4 1,258,958 - Dshi_1218 0.28 +0.6 1,258,958 - Dshi_1218 0.28 +1.0 1,259,211 + Dshi_1218 0.44 +0.6 1,259,229 - Dshi_1218 0.45 +0.3 1,259,275 + Dshi_1218 0.48 -0.3 1,259,418 - Dshi_1218 0.58 -0.1
Or see this region's nucleotide sequence