Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1141 and Dshi_1142 are separated by 3 nucleotides Dshi_1142 and Dshi_1143 overlap by 4 nucleotides Dshi_1143 and Dshi_1144 are separated by 21 nucleotides
Dshi_1141: Dshi_1141 - protoheme IX farnesyltransferase (RefSeq), at 1,168,989 to 1,169,975
_1141
Dshi_1142: Dshi_1142 - hypothetical protein (RefSeq), at 1,169,979 to 1,170,164
_1142
Dshi_1143: Dshi_1143 - cytochrome c oxidase assembly protein CtaG/Cox11 (RefSeq), at 1,170,161 to 1,170,772
_1143
Dshi_1144: Dshi_1144 - cytochrome c oxidase subunit III (RefSeq), at 1,170,794 to 1,171,600
_1144
Position (kb) 1169
1170
1171 Strain fitness (log2 ratio) -2
-1
0
1 at 1169.040 kb on + strand at 1169.150 kb on + strand, within Dshi_1141 at 1169.361 kb on + strand, within Dshi_1141 at 1169.581 kb on - strand, within Dshi_1141 at 1169.647 kb on + strand, within Dshi_1141 at 1169.657 kb on + strand, within Dshi_1141 at 1169.843 kb on + strand, within Dshi_1141 at 1169.909 kb on + strand at 1170.002 kb on + strand, within Dshi_1142 at 1170.118 kb on + strand, within Dshi_1142 at 1170.673 kb on + strand, within Dshi_1143
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,169,040 + +0.1 1,169,150 + Dshi_1141 0.16 +0.4 1,169,361 + Dshi_1141 0.38 +0.2 1,169,581 - Dshi_1141 0.60 -2.3 1,169,647 + Dshi_1141 0.67 +0.1 1,169,657 + Dshi_1141 0.68 +0.1 1,169,843 + Dshi_1141 0.87 +0.2 1,169,909 + +0.0 1,170,002 + Dshi_1142 0.12 -0.4 1,170,118 + Dshi_1142 0.75 -1.1 1,170,673 + Dshi_1143 0.84 -0.2
Or see this region's nucleotide sequence