Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1032 and Dshi_1033 are separated by 81 nucleotides Dshi_1033 and Dshi_1034 overlap by 8 nucleotides Dshi_1034 and Dshi_1035 are separated by 385 nucleotides
Dshi_1032: Dshi_1032 - hypothetical protein (RefSeq), at 1,065,916 to 1,066,362
_1032
Dshi_1033: Dshi_1033 - hypothetical protein (RefSeq), at 1,066,444 to 1,066,914
_1033
Dshi_1034: Dshi_1034 - transcriptional regulator, LuxR family (RefSeq), at 1,066,907 to 1,067,449
_1034
Dshi_1035: Dshi_1035 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,067,835 to 1,068,809
_1035
Position (kb)
1066
1067
1068 Strain fitness (log2 ratio)
-2
-1
0
1 at 1065.951 kb on + strand at 1065.967 kb on + strand, within Dshi_1032 at 1066.091 kb on + strand, within Dshi_1032 at 1066.095 kb on + strand, within Dshi_1032 at 1066.355 kb on - strand at 1066.534 kb on + strand, within Dshi_1033 at 1066.542 kb on - strand, within Dshi_1033 at 1066.599 kb on + strand, within Dshi_1033 at 1067.089 kb on + strand, within Dshi_1034 at 1067.234 kb on + strand, within Dshi_1034 at 1067.273 kb on - strand, within Dshi_1034 at 1067.354 kb on - strand, within Dshi_1034 at 1067.435 kb on + strand at 1067.506 kb on - strand at 1067.506 kb on - strand at 1067.753 kb on - strand at 1067.753 kb on - strand at 1067.871 kb on - strand at 1067.886 kb on - strand at 1067.904 kb on - strand at 1067.924 kb on - strand at 1068.014 kb on + strand, within Dshi_1035 at 1068.044 kb on + strand, within Dshi_1035 at 1068.072 kb on + strand, within Dshi_1035 at 1068.072 kb on + strand, within Dshi_1035 at 1068.072 kb on + strand, within Dshi_1035 at 1068.184 kb on + strand, within Dshi_1035 at 1068.199 kb on - strand, within Dshi_1035 at 1068.223 kb on - strand, within Dshi_1035 at 1068.251 kb on + strand, within Dshi_1035
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 1,065,951 + +0.1 1,065,967 + Dshi_1032 0.11 +0.0 1,066,091 + Dshi_1032 0.39 -0.1 1,066,095 + Dshi_1032 0.40 -0.3 1,066,355 - -0.2 1,066,534 + Dshi_1033 0.19 +0.2 1,066,542 - Dshi_1033 0.21 +0.5 1,066,599 + Dshi_1033 0.33 -0.1 1,067,089 + Dshi_1034 0.34 -0.4 1,067,234 + Dshi_1034 0.60 -0.5 1,067,273 - Dshi_1034 0.67 -2.1 1,067,354 - Dshi_1034 0.82 -0.1 1,067,435 + -0.3 1,067,506 - -0.5 1,067,506 - -0.6 1,067,753 - +0.8 1,067,753 - +0.3 1,067,871 - +0.7 1,067,886 - +0.4 1,067,904 - -0.1 1,067,924 - +0.0 1,068,014 + Dshi_1035 0.18 -1.0 1,068,044 + Dshi_1035 0.21 -0.2 1,068,072 + Dshi_1035 0.24 +1.1 1,068,072 + Dshi_1035 0.24 -0.3 1,068,072 + Dshi_1035 0.24 -0.3 1,068,184 + Dshi_1035 0.36 +0.8 1,068,199 - Dshi_1035 0.37 -0.7 1,068,223 - Dshi_1035 0.40 -0.1 1,068,251 + Dshi_1035 0.43 +0.4
Or see this region's nucleotide sequence