Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0899

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0898 and Dshi_0899 overlap by 4 nucleotidesDshi_0899 and Dshi_0900 are separated by 14 nucleotides Dshi_0898: Dshi_0898 - hypothetical protein (RefSeq), at 918,640 to 921,318 _0898 Dshi_0899: Dshi_0899 - hypothetical protein (RefSeq), at 921,315 to 922,355 _0899 Dshi_0900: Dshi_0900 - hypothetical protein (RefSeq), at 922,370 to 924,292 _0900 Position (kb) 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1at 920.325 kb on + strand, within Dshi_0898at 920.360 kb on - strand, within Dshi_0898at 920.467 kb on + strand, within Dshi_0898at 920.475 kb on - strand, within Dshi_0898at 920.477 kb on + strand, within Dshi_0898at 920.477 kb on + strand, within Dshi_0898at 920.477 kb on + strand, within Dshi_0898at 920.477 kb on + strand, within Dshi_0898at 920.485 kb on - strand, within Dshi_0898at 920.485 kb on - strand, within Dshi_0898at 920.485 kb on - strand, within Dshi_0898at 920.485 kb on - strand, within Dshi_0898at 920.714 kb on + strand, within Dshi_0898at 920.874 kb on - strand, within Dshi_0898at 920.910 kb on + strand, within Dshi_0898at 921.054 kb on - strandat 921.100 kb on + strandat 921.177 kb on + strandat 921.577 kb on - strand, within Dshi_0899at 921.607 kb on + strand, within Dshi_0899at 921.864 kb on - strand, within Dshi_0899at 921.866 kb on + strand, within Dshi_0899at 921.874 kb on - strandat 922.016 kb on + strand, within Dshi_0899at 922.033 kb on + strand, within Dshi_0899at 922.088 kb on + strand, within Dshi_0899at 922.155 kb on + strand, within Dshi_0899at 922.163 kb on - strand, within Dshi_0899at 922.262 kb on + strandat 922.294 kb on + strandat 922.317 kb on - strandat 922.372 kb on - strandat 922.387 kb on + strandat 922.490 kb on + strandat 922.521 kb on - strandat 922.540 kb on - strandat 922.634 kb on - strand, within Dshi_0900at 922.693 kb on - strand, within Dshi_0900at 922.757 kb on - strand, within Dshi_0900at 922.887 kb on - strand, within Dshi_0900at 923.027 kb on - strand, within Dshi_0900at 923.068 kb on + strand, within Dshi_0900at 923.068 kb on + strand, within Dshi_0900at 923.113 kb on + strand, within Dshi_0900at 923.143 kb on + strand, within Dshi_0900at 923.296 kb on - strand, within Dshi_0900at 923.319 kb on + strand, within Dshi_0900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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920,325 + Dshi_0898 0.63 -2.3
920,360 - Dshi_0898 0.64 -1.2
920,467 + Dshi_0898 0.68 -0.6
920,475 - Dshi_0898 0.68 +0.6
920,477 + Dshi_0898 0.69 -0.6
920,477 + Dshi_0898 0.69 -3.2
920,477 + Dshi_0898 0.69 -0.3
920,477 + Dshi_0898 0.69 -1.2
920,485 - Dshi_0898 0.69 -1.0
920,485 - Dshi_0898 0.69 -0.7
920,485 - Dshi_0898 0.69 -0.5
920,485 - Dshi_0898 0.69 +1.7
920,714 + Dshi_0898 0.77 -1.1
920,874 - Dshi_0898 0.83 -1.6
920,910 + Dshi_0898 0.85 +0.2
921,054 - -1.3
921,100 + -0.5
921,177 + -1.5
921,577 - Dshi_0899 0.25 -0.4
921,607 + Dshi_0899 0.28 -0.5
921,864 - Dshi_0899 0.53 -1.4
921,866 + Dshi_0899 0.53 -1.2
921,874 - -1.2
922,016 + Dshi_0899 0.67 -1.1
922,033 + Dshi_0899 0.69 -1.8
922,088 + Dshi_0899 0.74 -0.4
922,155 + Dshi_0899 0.81 +0.4
922,163 - Dshi_0899 0.81 -0.9
922,262 + -2.3
922,294 + -1.1
922,317 - -1.2
922,372 - +1.1
922,387 + -0.5
922,490 + -1.0
922,521 - -0.5
922,540 - -1.6
922,634 - Dshi_0900 0.14 -0.9
922,693 - Dshi_0900 0.17 +0.4
922,757 - Dshi_0900 0.20 -1.7
922,887 - Dshi_0900 0.27 -0.7
923,027 - Dshi_0900 0.34 +0.0
923,068 + Dshi_0900 0.36 -0.6
923,068 + Dshi_0900 0.36 +0.6
923,113 + Dshi_0900 0.39 -0.2
923,143 + Dshi_0900 0.40 -0.0
923,296 - Dshi_0900 0.48 -0.4
923,319 + Dshi_0900 0.49 -0.9

Or see this region's nucleotide sequence