Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0898 and Dshi_0899 overlap by 4 nucleotides Dshi_0899 and Dshi_0900 are separated by 14 nucleotides
Dshi_0898: Dshi_0898 - hypothetical protein (RefSeq), at 918,640 to 921,318
_0898
Dshi_0899: Dshi_0899 - hypothetical protein (RefSeq), at 921,315 to 922,355
_0899
Dshi_0900: Dshi_0900 - hypothetical protein (RefSeq), at 922,370 to 924,292
_0900
Position (kb)
921
922
923 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 920.325 kb on + strand, within Dshi_0898 at 920.360 kb on - strand, within Dshi_0898 at 920.467 kb on + strand, within Dshi_0898 at 920.475 kb on - strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.714 kb on + strand, within Dshi_0898 at 920.874 kb on - strand, within Dshi_0898 at 920.910 kb on + strand, within Dshi_0898 at 921.054 kb on - strand at 921.100 kb on + strand at 921.177 kb on + strand at 921.577 kb on - strand, within Dshi_0899 at 921.607 kb on + strand, within Dshi_0899 at 921.864 kb on - strand, within Dshi_0899 at 921.866 kb on + strand, within Dshi_0899 at 921.874 kb on - strand at 922.016 kb on + strand, within Dshi_0899 at 922.033 kb on + strand, within Dshi_0899 at 922.088 kb on + strand, within Dshi_0899 at 922.155 kb on + strand, within Dshi_0899 at 922.163 kb on - strand, within Dshi_0899 at 922.262 kb on + strand at 922.294 kb on + strand at 922.317 kb on - strand at 922.372 kb on - strand at 922.387 kb on + strand at 922.490 kb on + strand at 922.521 kb on - strand at 922.540 kb on - strand at 922.634 kb on - strand, within Dshi_0900 at 922.693 kb on - strand, within Dshi_0900 at 922.757 kb on - strand, within Dshi_0900 at 922.887 kb on - strand, within Dshi_0900 at 923.027 kb on - strand, within Dshi_0900 at 923.068 kb on + strand, within Dshi_0900 at 923.068 kb on + strand, within Dshi_0900 at 923.113 kb on + strand, within Dshi_0900 at 923.143 kb on + strand, within Dshi_0900 at 923.296 kb on - strand, within Dshi_0900 at 923.319 kb on + strand, within Dshi_0900
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 920,325 + Dshi_0898 0.63 -2.3 920,360 - Dshi_0898 0.64 -1.2 920,467 + Dshi_0898 0.68 -0.6 920,475 - Dshi_0898 0.68 +0.6 920,477 + Dshi_0898 0.69 -0.6 920,477 + Dshi_0898 0.69 -3.2 920,477 + Dshi_0898 0.69 -0.3 920,477 + Dshi_0898 0.69 -1.2 920,485 - Dshi_0898 0.69 -1.0 920,485 - Dshi_0898 0.69 -0.7 920,485 - Dshi_0898 0.69 -0.5 920,485 - Dshi_0898 0.69 +1.7 920,714 + Dshi_0898 0.77 -1.1 920,874 - Dshi_0898 0.83 -1.6 920,910 + Dshi_0898 0.85 +0.2 921,054 - -1.3 921,100 + -0.5 921,177 + -1.5 921,577 - Dshi_0899 0.25 -0.4 921,607 + Dshi_0899 0.28 -0.5 921,864 - Dshi_0899 0.53 -1.4 921,866 + Dshi_0899 0.53 -1.2 921,874 - -1.2 922,016 + Dshi_0899 0.67 -1.1 922,033 + Dshi_0899 0.69 -1.8 922,088 + Dshi_0899 0.74 -0.4 922,155 + Dshi_0899 0.81 +0.4 922,163 - Dshi_0899 0.81 -0.9 922,262 + -2.3 922,294 + -1.1 922,317 - -1.2 922,372 - +1.1 922,387 + -0.5 922,490 + -1.0 922,521 - -0.5 922,540 - -1.6 922,634 - Dshi_0900 0.14 -0.9 922,693 - Dshi_0900 0.17 +0.4 922,757 - Dshi_0900 0.20 -1.7 922,887 - Dshi_0900 0.27 -0.7 923,027 - Dshi_0900 0.34 +0.0 923,068 + Dshi_0900 0.36 -0.6 923,068 + Dshi_0900 0.36 +0.6 923,113 + Dshi_0900 0.39 -0.2 923,143 + Dshi_0900 0.40 -0.0 923,296 - Dshi_0900 0.48 -0.4 923,319 + Dshi_0900 0.49 -0.9
Or see this region's nucleotide sequence