Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0897 and Dshi_0898 are separated by 19 nucleotides Dshi_0898 and Dshi_0899 overlap by 4 nucleotides
Dshi_0897: Dshi_0897 - virulence protein SrfB (RefSeq), at 915,495 to 918,620
_0897
Dshi_0898: Dshi_0898 - hypothetical protein (RefSeq), at 918,640 to 921,318
_0898
Dshi_0899: Dshi_0899 - hypothetical protein (RefSeq), at 921,315 to 922,355
_0899
Position (kb) 918
919
920
921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 917.660 kb on + strand, within Dshi_0897 at 917.708 kb on - strand, within Dshi_0897 at 917.845 kb on + strand, within Dshi_0897 at 918.348 kb on + strand at 918.455 kb on - strand at 918.551 kb on + strand at 918.573 kb on + strand at 918.686 kb on - strand at 919.069 kb on + strand, within Dshi_0898 at 919.134 kb on - strand, within Dshi_0898 at 919.176 kb on + strand, within Dshi_0898 at 919.176 kb on + strand, within Dshi_0898 at 919.226 kb on - strand, within Dshi_0898 at 919.319 kb on + strand, within Dshi_0898 at 919.390 kb on - strand, within Dshi_0898 at 919.421 kb on + strand, within Dshi_0898 at 919.525 kb on + strand, within Dshi_0898 at 919.545 kb on + strand, within Dshi_0898 at 919.788 kb on + strand, within Dshi_0898 at 919.793 kb on + strand, within Dshi_0898 at 919.867 kb on + strand, within Dshi_0898 at 919.907 kb on - strand, within Dshi_0898 at 919.910 kb on + strand, within Dshi_0898 at 920.181 kb on + strand, within Dshi_0898 at 920.204 kb on - strand, within Dshi_0898 at 920.255 kb on - strand, within Dshi_0898 at 920.325 kb on + strand, within Dshi_0898 at 920.360 kb on - strand, within Dshi_0898 at 920.467 kb on + strand, within Dshi_0898 at 920.475 kb on - strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.714 kb on + strand, within Dshi_0898 at 920.874 kb on - strand, within Dshi_0898 at 920.910 kb on + strand, within Dshi_0898 at 921.054 kb on - strand at 921.100 kb on + strand at 921.177 kb on + strand at 921.577 kb on - strand, within Dshi_0899 at 921.607 kb on + strand, within Dshi_0899 at 921.864 kb on - strand, within Dshi_0899 at 921.866 kb on + strand, within Dshi_0899 at 921.874 kb on - strand at 922.016 kb on + strand, within Dshi_0899 at 922.033 kb on + strand, within Dshi_0899 at 922.088 kb on + strand, within Dshi_0899 at 922.155 kb on + strand, within Dshi_0899 at 922.163 kb on - strand, within Dshi_0899 at 922.262 kb on + strand at 922.294 kb on + strand at 922.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 917,660 + Dshi_0897 0.69 -0.3 917,708 - Dshi_0897 0.71 -0.7 917,845 + Dshi_0897 0.75 +0.4 918,348 + -1.2 918,455 - -0.7 918,551 + -0.5 918,573 + -0.7 918,686 - -1.2 919,069 + Dshi_0898 0.16 -0.6 919,134 - Dshi_0898 0.18 -0.6 919,176 + Dshi_0898 0.20 -1.4 919,176 + Dshi_0898 0.20 -1.5 919,226 - Dshi_0898 0.22 -0.5 919,319 + Dshi_0898 0.25 -1.4 919,390 - Dshi_0898 0.28 -0.4 919,421 + Dshi_0898 0.29 +1.1 919,525 + Dshi_0898 0.33 -1.1 919,545 + Dshi_0898 0.34 +1.1 919,788 + Dshi_0898 0.43 -0.8 919,793 + Dshi_0898 0.43 -1.5 919,867 + Dshi_0898 0.46 -0.7 919,907 - Dshi_0898 0.47 -1.5 919,910 + Dshi_0898 0.47 -1.0 920,181 + Dshi_0898 0.58 -1.5 920,204 - Dshi_0898 0.58 -0.9 920,255 - Dshi_0898 0.60 +0.1 920,325 + Dshi_0898 0.63 -2.3 920,360 - Dshi_0898 0.64 -1.2 920,467 + Dshi_0898 0.68 -0.6 920,475 - Dshi_0898 0.68 +0.6 920,477 + Dshi_0898 0.69 -0.6 920,477 + Dshi_0898 0.69 -3.2 920,477 + Dshi_0898 0.69 -0.3 920,477 + Dshi_0898 0.69 -1.2 920,485 - Dshi_0898 0.69 -1.0 920,485 - Dshi_0898 0.69 -0.7 920,485 - Dshi_0898 0.69 -0.5 920,485 - Dshi_0898 0.69 +1.7 920,714 + Dshi_0898 0.77 -1.1 920,874 - Dshi_0898 0.83 -1.6 920,910 + Dshi_0898 0.85 +0.2 921,054 - -1.3 921,100 + -0.5 921,177 + -1.5 921,577 - Dshi_0899 0.25 -0.4 921,607 + Dshi_0899 0.28 -0.5 921,864 - Dshi_0899 0.53 -1.4 921,866 + Dshi_0899 0.53 -1.2 921,874 - -1.2 922,016 + Dshi_0899 0.67 -1.1 922,033 + Dshi_0899 0.69 -1.8 922,088 + Dshi_0899 0.74 -0.4 922,155 + Dshi_0899 0.81 +0.4 922,163 - Dshi_0899 0.81 -0.9 922,262 + -2.3 922,294 + -1.1 922,317 - -1.2
Or see this region's nucleotide sequence