Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0829 and Dshi_0830 overlap by 4 nucleotides Dshi_0830 and Dshi_0831 overlap by 4 nucleotides Dshi_0831 and Dshi_0832 are separated by 0 nucleotides
Dshi_0829: Dshi_0829 - Phosphopentomutase (EC 5.4.2.7) <small>(from data)</small>, at 837,056 to 838,255
_0829
Dshi_0830: Dshi_0830 - Adenosine deaminase (EC 3.5.4.4) <small>(from data)</small>, at 838,252 to 839,247
_0830
Dshi_0831: Dshi_0831 - uracil phosphoribosyltransferase (RefSeq), at 839,244 to 839,876
_0831
Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893
_0832
Position (kb) 839
840 Strain fitness (log2 ratio) -2
-1
0
1 at 838.435 kb on - strand, within Dshi_0830 at 838.516 kb on - strand, within Dshi_0830 at 838.636 kb on + strand, within Dshi_0830 at 838.733 kb on - strand, within Dshi_0830 at 838.746 kb on + strand, within Dshi_0830 at 839.002 kb on - strand, within Dshi_0830 at 839.154 kb on + strand at 839.247 kb on + strand at 839.368 kb on - strand, within Dshi_0831 at 839.408 kb on + strand, within Dshi_0831 at 839.408 kb on + strand, within Dshi_0831 at 839.632 kb on + strand, within Dshi_0831 at 839.646 kb on - strand, within Dshi_0831 at 839.774 kb on - strand, within Dshi_0831 at 839.819 kb on + strand at 839.935 kb on - strand at 839.969 kb on + strand at 840.002 kb on + strand, within Dshi_0832 at 840.213 kb on + strand, within Dshi_0832 at 840.353 kb on + strand, within Dshi_0832 at 840.434 kb on + strand, within Dshi_0832 at 840.594 kb on - strand, within Dshi_0832 at 840.688 kb on - strand, within Dshi_0832 at 840.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 838,435 - Dshi_0830 0.18 -0.4 838,516 - Dshi_0830 0.27 +0.4 838,636 + Dshi_0830 0.39 -2.4 838,733 - Dshi_0830 0.48 +0.6 838,746 + Dshi_0830 0.50 +0.1 839,002 - Dshi_0830 0.75 +0.3 839,154 + +0.3 839,247 + -0.0 839,368 - Dshi_0831 0.20 +0.3 839,408 + Dshi_0831 0.26 +1.1 839,408 + Dshi_0831 0.26 -0.2 839,632 + Dshi_0831 0.61 +0.9 839,646 - Dshi_0831 0.64 +1.2 839,774 - Dshi_0831 0.84 -0.5 839,819 + -0.2 839,935 - +1.0 839,969 + +1.1 840,002 + Dshi_0832 0.12 -0.3 840,213 + Dshi_0832 0.33 +0.1 840,353 + Dshi_0832 0.47 +0.2 840,434 + Dshi_0832 0.55 -0.9 840,594 - Dshi_0832 0.71 +0.2 840,688 - Dshi_0832 0.80 -0.7 840,854 - +0.8
Or see this region's nucleotide sequence