Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0794 and Dshi_0795 are separated by 1 nucleotides Dshi_0795 and Dshi_0796 are separated by 190 nucleotides Dshi_0796 and Dshi_0797 overlap by 4 nucleotides Dshi_0797 and Dshi_0798 overlap by 11 nucleotides
Dshi_0794: Dshi_0794 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 801,568 to 802,155
_0794
Dshi_0795: Dshi_0795 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq), at 802,157 to 802,795
_0795
Dshi_0796: Dshi_0796 - ornithine carbamoyltransferase (RefSeq), at 802,986 to 803,912
_0796
Dshi_0797: Dshi_0797 - GCN5-related N-acetyltransferase (RefSeq), at 803,909 to 804,442
_0797
Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613
_0798
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1 at 802.803 kb on + strand at 802.826 kb on - strand at 802.878 kb on + strand at 803.137 kb on - strand, within Dshi_0796 at 803.385 kb on - strand, within Dshi_0796 at 803.387 kb on + strand, within Dshi_0796 at 803.410 kb on + strand, within Dshi_0796 at 803.502 kb on - strand, within Dshi_0796 at 803.601 kb on + strand, within Dshi_0796 at 803.781 kb on + strand, within Dshi_0796 at 803.809 kb on + strand, within Dshi_0796 at 803.874 kb on + strand at 803.953 kb on - strand at 804.048 kb on + strand, within Dshi_0797 at 804.095 kb on - strand, within Dshi_0797 at 804.220 kb on - strand, within Dshi_0797 at 804.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 802,803 + +0.1 802,826 - +0.9 802,878 + +0.3 803,137 - Dshi_0796 0.16 +0.5 803,385 - Dshi_0796 0.43 -0.7 803,387 + Dshi_0796 0.43 -2.4 803,410 + Dshi_0796 0.46 -1.1 803,502 - Dshi_0796 0.56 -0.6 803,601 + Dshi_0796 0.66 -0.1 803,781 + Dshi_0796 0.86 -0.8 803,809 + Dshi_0796 0.89 -0.4 803,874 + -0.4 803,953 - -0.1 804,048 + Dshi_0797 0.26 +0.1 804,095 - Dshi_0797 0.35 -1.0 804,220 - Dshi_0797 0.58 +0.1 804,447 - -0.3
Or see this region's nucleotide sequence