Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0521

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0520 and Dshi_0521 overlap by 4 nucleotidesDshi_0521 and Dshi_0522 are separated by 57 nucleotides Dshi_0520: Dshi_0520 - 5-methylthioribose kinase (RefSeq), at 504,830 to 506,089 _0520 Dshi_0521: Dshi_0521 - eIF-2B alpha/beta/delta-related uncharacterized protein (RefSeq), at 506,086 to 507,189 _0521 Dshi_0522: Dshi_0522 - transcriptional regulator, DeoR family (RefSeq), at 507,247 to 508,206 _0522 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2 3at 505.110 kb on + strand, within Dshi_0520at 505.365 kb on + strand, within Dshi_0520at 505.378 kb on - strand, within Dshi_0520at 505.378 kb on - strand, within Dshi_0520at 505.413 kb on - strand, within Dshi_0520at 505.425 kb on + strand, within Dshi_0520at 505.452 kb on + strand, within Dshi_0520at 505.471 kb on + strand, within Dshi_0520at 505.476 kb on + strand, within Dshi_0520at 505.496 kb on - strand, within Dshi_0520at 505.554 kb on + strand, within Dshi_0520at 505.638 kb on - strand, within Dshi_0520at 505.687 kb on + strand, within Dshi_0520at 505.696 kb on - strand, within Dshi_0520at 505.718 kb on - strand, within Dshi_0520at 505.729 kb on + strand, within Dshi_0520at 505.729 kb on + strand, within Dshi_0520at 505.734 kb on + strand, within Dshi_0520at 505.777 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.784 kb on + strand, within Dshi_0520at 505.825 kb on + strand, within Dshi_0520at 505.861 kb on + strand, within Dshi_0520at 505.861 kb on + strand, within Dshi_0520at 505.875 kb on + strand, within Dshi_0520at 505.909 kb on - strand, within Dshi_0520at 505.945 kb on + strand, within Dshi_0520at 505.955 kb on + strand, within Dshi_0520at 505.963 kb on - strand, within Dshi_0520at 506.065 kb on + strandat 506.099 kb on + strandat 506.106 kb on + strandat 506.114 kb on - strandat 506.170 kb on + strandat 506.179 kb on - strandat 506.261 kb on + strand, within Dshi_0521at 506.264 kb on - strand, within Dshi_0521at 506.287 kb on - strand, within Dshi_0521at 506.287 kb on - strand, within Dshi_0521at 506.289 kb on + strand, within Dshi_0521at 506.289 kb on + strand, within Dshi_0521at 506.401 kb on + strand, within Dshi_0521at 506.404 kb on - strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.415 kb on + strand, within Dshi_0521at 506.420 kb on + strand, within Dshi_0521at 506.449 kb on - strand, within Dshi_0521at 506.507 kb on + strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.515 kb on - strand, within Dshi_0521at 506.520 kb on - strand, within Dshi_0521at 506.520 kb on - strand, within Dshi_0521at 506.621 kb on + strand, within Dshi_0521at 506.624 kb on - strand, within Dshi_0521at 506.661 kb on + strand, within Dshi_0521at 506.661 kb on + strand, within Dshi_0521at 506.669 kb on - strand, within Dshi_0521at 506.671 kb on + strand, within Dshi_0521at 506.688 kb on + strand, within Dshi_0521at 506.690 kb on + strand, within Dshi_0521at 506.708 kb on + strand, within Dshi_0521at 506.716 kb on - strand, within Dshi_0521at 506.762 kb on - strand, within Dshi_0521at 506.791 kb on - strand, within Dshi_0521at 506.802 kb on + strand, within Dshi_0521at 506.847 kb on + strand, within Dshi_0521at 506.855 kb on - strand, within Dshi_0521at 506.880 kb on + strand, within Dshi_0521at 506.880 kb on + strand, within Dshi_0521at 506.888 kb on - strand, within Dshi_0521at 506.935 kb on + strand, within Dshi_0521at 506.935 kb on + strand, within Dshi_0521at 507.036 kb on + strand, within Dshi_0521at 507.036 kb on + strand, within Dshi_0521at 507.067 kb on - strand, within Dshi_0521at 507.096 kb on + strandat 507.144 kb on + strandat 507.179 kb on - strandat 507.310 kb on - strandat 507.310 kb on - strandat 507.319 kb on - strandat 507.361 kb on + strand, within Dshi_0522at 507.369 kb on - strand, within Dshi_0522at 507.371 kb on + strand, within Dshi_0522at 507.384 kb on - strand, within Dshi_0522at 507.398 kb on + strand, within Dshi_0522at 507.398 kb on + strand, within Dshi_0522at 507.401 kb on - strand, within Dshi_0522at 507.453 kb on + strand, within Dshi_0522at 507.454 kb on - strand, within Dshi_0522at 507.543 kb on + strand, within Dshi_0522at 507.789 kb on + strand, within Dshi_0522at 507.806 kb on + strand, within Dshi_0522at 507.819 kb on - strand, within Dshi_0522at 507.843 kb on + strand, within Dshi_0522at 507.879 kb on + strand, within Dshi_0522at 507.896 kb on - strand, within Dshi_0522at 507.931 kb on + strand, within Dshi_0522at 508.006 kb on - strand, within Dshi_0522at 508.049 kb on - strand, within Dshi_0522at 508.052 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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505,110 + Dshi_0520 0.22 +0.3
505,365 + Dshi_0520 0.42 -0.2
505,378 - Dshi_0520 0.43 -1.2
505,378 - Dshi_0520 0.43 -0.9
505,413 - Dshi_0520 0.46 -1.0
505,425 + Dshi_0520 0.47 -1.3
505,452 + Dshi_0520 0.49 -0.2
505,471 + Dshi_0520 0.51 -0.2
505,476 + Dshi_0520 0.51 -0.1
505,496 - Dshi_0520 0.53 +0.6
505,554 + Dshi_0520 0.57 +0.1
505,638 - Dshi_0520 0.64 +0.0
505,687 + Dshi_0520 0.68 -0.3
505,696 - Dshi_0520 0.69 +0.7
505,718 - Dshi_0520 0.70 +0.2
505,729 + Dshi_0520 0.71 -1.7
505,729 + Dshi_0520 0.71 -0.3
505,734 + Dshi_0520 0.72 +1.4
505,777 + Dshi_0520 0.75 -0.8
505,784 + Dshi_0520 0.76 -0.6
505,784 + Dshi_0520 0.76 -0.1
505,784 + Dshi_0520 0.76 -0.5
505,784 + Dshi_0520 0.76 -0.2
505,784 + Dshi_0520 0.76 -0.1
505,825 + Dshi_0520 0.79 +1.1
505,861 + Dshi_0520 0.82 -0.1
505,861 + Dshi_0520 0.82 +2.8
505,875 + Dshi_0520 0.83 +0.0
505,909 - Dshi_0520 0.86 +0.2
505,945 + Dshi_0520 0.88 -0.7
505,955 + Dshi_0520 0.89 +0.1
505,963 - Dshi_0520 0.90 -1.1
506,065 + -0.6
506,099 + +0.6
506,106 + -0.6
506,114 - +0.2
506,170 + +0.0
506,179 - -1.2
506,261 + Dshi_0521 0.16 -0.4
506,264 - Dshi_0521 0.16 +1.5
506,287 - Dshi_0521 0.18 -1.6
506,287 - Dshi_0521 0.18 -0.6
506,289 + Dshi_0521 0.18 -1.7
506,289 + Dshi_0521 0.18 -1.2
506,401 + Dshi_0521 0.29 +0.0
506,404 - Dshi_0521 0.29 +0.4
506,415 + Dshi_0521 0.30 -0.8
506,415 + Dshi_0521 0.30 +0.4
506,415 + Dshi_0521 0.30 -0.7
506,420 + Dshi_0521 0.30 -0.5
506,449 - Dshi_0521 0.33 +0.5
506,507 + Dshi_0521 0.38 -0.9
506,515 - Dshi_0521 0.39 -0.8
506,515 - Dshi_0521 0.39 -1.3
506,515 - Dshi_0521 0.39 -2.5
506,515 - Dshi_0521 0.39 -0.4
506,520 - Dshi_0521 0.39 -2.2
506,520 - Dshi_0521 0.39 -0.4
506,621 + Dshi_0521 0.48 -1.3
506,624 - Dshi_0521 0.49 -0.3
506,661 + Dshi_0521 0.52 -0.9
506,661 + Dshi_0521 0.52 -0.7
506,669 - Dshi_0521 0.53 -0.3
506,671 + Dshi_0521 0.53 -0.2
506,688 + Dshi_0521 0.55 +0.7
506,690 + Dshi_0521 0.55 -0.4
506,708 + Dshi_0521 0.56 -0.4
506,716 - Dshi_0521 0.57 -0.5
506,762 - Dshi_0521 0.61 -0.0
506,791 - Dshi_0521 0.64 +0.9
506,802 + Dshi_0521 0.65 -0.1
506,847 + Dshi_0521 0.69 -0.8
506,855 - Dshi_0521 0.70 +0.1
506,880 + Dshi_0521 0.72 +0.7
506,880 + Dshi_0521 0.72 -0.6
506,888 - Dshi_0521 0.73 -1.0
506,935 + Dshi_0521 0.77 -1.0
506,935 + Dshi_0521 0.77 +0.3
507,036 + Dshi_0521 0.86 -0.8
507,036 + Dshi_0521 0.86 -1.5
507,067 - Dshi_0521 0.89 -0.3
507,096 + -0.8
507,144 + -0.6
507,179 - -0.7
507,310 - -0.8
507,310 - -0.2
507,319 - +0.1
507,361 + Dshi_0522 0.12 +0.5
507,369 - Dshi_0522 0.13 -0.5
507,371 + Dshi_0522 0.13 +0.8
507,384 - Dshi_0522 0.14 +0.3
507,398 + Dshi_0522 0.16 +0.3
507,398 + Dshi_0522 0.16 +0.9
507,401 - Dshi_0522 0.16 -0.5
507,453 + Dshi_0522 0.21 -1.0
507,454 - Dshi_0522 0.22 -0.3
507,543 + Dshi_0522 0.31 -0.2
507,789 + Dshi_0522 0.56 +0.0
507,806 + Dshi_0522 0.58 -0.2
507,819 - Dshi_0522 0.60 -0.8
507,843 + Dshi_0522 0.62 -1.4
507,879 + Dshi_0522 0.66 +1.3
507,896 - Dshi_0522 0.68 -0.2
507,931 + Dshi_0522 0.71 -0.7
508,006 - Dshi_0522 0.79 +1.6
508,049 - Dshi_0522 0.84 -0.8
508,052 + Dshi_0522 0.84 -0.0
508,094 + Dshi_0522 0.88 -0.2
508,094 + Dshi_0522 0.88 -0.8
508,170 - -0.8

Or see this region's nucleotide sequence