Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0508 and Dshi_0509 are separated by 93 nucleotides Dshi_0509 and Dshi_0510 are separated by 181 nucleotides
Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531
_0508
Dshi_0509: Dshi_0509 - hypothetical protein (RefSeq), at 494,625 to 495,407
_0509
Dshi_0510: Dshi_0510 - conserved hypothetical beta-lactamase (RefSeq), at 495,589 to 496,662
_0510
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 493.720 kb on + strand, within Dshi_0508 at 493.787 kb on - strand, within Dshi_0508 at 493.800 kb on + strand, within Dshi_0508 at 493.831 kb on + strand, within Dshi_0508 at 493.893 kb on + strand, within Dshi_0508 at 493.901 kb on - strand, within Dshi_0508 at 493.965 kb on + strand, within Dshi_0508 at 494.022 kb on + strand, within Dshi_0508 at 494.058 kb on - strand, within Dshi_0508 at 494.067 kb on - strand, within Dshi_0508 at 494.103 kb on - strand, within Dshi_0508 at 494.197 kb on - strand, within Dshi_0508 at 494.236 kb on + strand, within Dshi_0508 at 494.236 kb on + strand, within Dshi_0508 at 494.236 kb on + strand, within Dshi_0508 at 494.266 kb on + strand, within Dshi_0508 at 494.280 kb on - strand, within Dshi_0508 at 494.302 kb on + strand, within Dshi_0508 at 494.302 kb on + strand, within Dshi_0508 at 494.310 kb on - strand, within Dshi_0508 at 494.370 kb on + strand, within Dshi_0508 at 494.378 kb on - strand, within Dshi_0508 at 494.425 kb on - strand at 494.436 kb on - strand at 494.458 kb on + strand at 494.468 kb on - strand at 494.559 kb on + strand at 494.559 kb on + strand at 494.577 kb on - strand at 494.623 kb on + strand at 494.655 kb on + strand at 494.697 kb on - strand at 494.742 kb on + strand, within Dshi_0509 at 494.793 kb on + strand, within Dshi_0509 at 494.866 kb on - strand, within Dshi_0509 at 494.926 kb on + strand, within Dshi_0509 at 494.948 kb on + strand, within Dshi_0509 at 495.121 kb on - strand, within Dshi_0509 at 495.131 kb on - strand, within Dshi_0509 at 495.154 kb on - strand, within Dshi_0509 at 495.156 kb on + strand, within Dshi_0509 at 495.166 kb on - strand, within Dshi_0509 at 495.203 kb on + strand, within Dshi_0509 at 495.211 kb on - strand, within Dshi_0509 at 495.213 kb on + strand, within Dshi_0509 at 495.216 kb on + strand, within Dshi_0509 at 495.218 kb on + strand, within Dshi_0509 at 495.309 kb on + strand, within Dshi_0509 at 495.391 kb on + strand at 495.526 kb on - strand at 495.625 kb on - strand at 495.638 kb on + strand at 495.657 kb on - strand at 495.667 kb on - strand at 495.684 kb on - strand at 495.701 kb on + strand, within Dshi_0510 at 495.722 kb on - strand, within Dshi_0510 at 495.722 kb on - strand, within Dshi_0510 at 495.722 kb on - strand, within Dshi_0510 at 495.881 kb on - strand, within Dshi_0510 at 495.935 kb on - strand, within Dshi_0510 at 496.038 kb on - strand, within Dshi_0510 at 496.043 kb on - strand, within Dshi_0510 at 496.047 kb on - strand, within Dshi_0510 at 496.106 kb on - strand, within Dshi_0510 at 496.110 kb on + strand, within Dshi_0510 at 496.118 kb on - strand, within Dshi_0510 at 496.151 kb on - strand, within Dshi_0510 at 496.151 kb on - strand, within Dshi_0510 at 496.202 kb on + strand, within Dshi_0510 at 496.223 kb on + strand, within Dshi_0510 at 496.231 kb on - strand, within Dshi_0510 at 496.235 kb on - strand, within Dshi_0510 at 496.242 kb on - strand, within Dshi_0510 at 496.336 kb on - strand, within Dshi_0510 at 496.370 kb on - strand, within Dshi_0510
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 493,720 + Dshi_0508 0.33 -0.7 493,787 - Dshi_0508 0.39 -1.1 493,800 + Dshi_0508 0.40 +0.3 493,831 + Dshi_0508 0.42 -2.2 493,893 + Dshi_0508 0.47 -0.3 493,901 - Dshi_0508 0.48 -0.3 493,965 + Dshi_0508 0.53 -0.3 494,022 + Dshi_0508 0.58 -0.1 494,058 - Dshi_0508 0.61 -0.3 494,067 - Dshi_0508 0.62 +0.2 494,103 - Dshi_0508 0.65 +0.3 494,197 - Dshi_0508 0.72 -0.4 494,236 + Dshi_0508 0.76 +0.4 494,236 + Dshi_0508 0.76 +1.6 494,236 + Dshi_0508 0.76 -1.6 494,266 + Dshi_0508 0.78 -0.7 494,280 - Dshi_0508 0.79 +0.2 494,302 + Dshi_0508 0.81 -1.0 494,302 + Dshi_0508 0.81 +1.7 494,310 - Dshi_0508 0.82 +0.8 494,370 + Dshi_0508 0.87 -1.1 494,378 - Dshi_0508 0.87 -0.5 494,425 - -0.1 494,436 - +0.6 494,458 + +0.4 494,468 - -0.2 494,559 + -0.3 494,559 + -0.2 494,577 - -0.1 494,623 + +0.2 494,655 + -0.5 494,697 - -0.5 494,742 + Dshi_0509 0.15 -2.5 494,793 + Dshi_0509 0.21 -0.1 494,866 - Dshi_0509 0.31 +0.1 494,926 + Dshi_0509 0.38 +0.2 494,948 + Dshi_0509 0.41 -0.1 495,121 - Dshi_0509 0.63 -0.9 495,131 - Dshi_0509 0.65 -0.4 495,154 - Dshi_0509 0.68 -1.5 495,156 + Dshi_0509 0.68 -0.7 495,166 - Dshi_0509 0.69 -0.8 495,203 + Dshi_0509 0.74 -0.3 495,211 - Dshi_0509 0.75 +0.5 495,213 + Dshi_0509 0.75 -1.7 495,216 + Dshi_0509 0.75 -0.4 495,218 + Dshi_0509 0.76 +0.2 495,309 + Dshi_0509 0.87 -0.6 495,391 + -0.3 495,526 - -0.6 495,625 - +0.7 495,638 + -0.8 495,657 - +1.0 495,667 - -0.5 495,684 - -0.9 495,701 + Dshi_0510 0.10 -0.6 495,722 - Dshi_0510 0.12 +0.6 495,722 - Dshi_0510 0.12 -0.8 495,722 - Dshi_0510 0.12 +0.6 495,881 - Dshi_0510 0.27 +0.6 495,935 - Dshi_0510 0.32 -0.2 496,038 - Dshi_0510 0.42 -0.6 496,043 - Dshi_0510 0.42 -0.1 496,047 - Dshi_0510 0.43 -0.4 496,106 - Dshi_0510 0.48 -0.6 496,110 + Dshi_0510 0.49 +1.1 496,118 - Dshi_0510 0.49 +0.2 496,151 - Dshi_0510 0.52 -0.2 496,151 - Dshi_0510 0.52 -0.8 496,202 + Dshi_0510 0.57 -0.3 496,223 + Dshi_0510 0.59 +0.2 496,231 - Dshi_0510 0.60 +0.1 496,235 - Dshi_0510 0.60 -0.3 496,242 - Dshi_0510 0.61 -0.2 496,336 - Dshi_0510 0.70 -0.2 496,370 - Dshi_0510 0.73 +0.7
Or see this region's nucleotide sequence