Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0466

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0464 and Dshi_0465 are separated by 45 nucleotidesDshi_0465 and Dshi_0466 are separated by 12 nucleotidesDshi_0466 and Dshi_0467 overlap by 4 nucleotides Dshi_0464: Dshi_0464 - Integrase catalytic region (RefSeq), at 449,446 to 450,267 _0464 Dshi_0465: Dshi_0465 - two component transcriptional regulator, LuxR family (RefSeq), at 450,313 to 451,032 _0465 Dshi_0466: Dshi_0466 - domain of unknown function DUF1745 (RefSeq), at 451,045 to 452,202 _0466 Dshi_0467: Dshi_0467 - histidine kinase (RefSeq), at 452,199 to 454,475 _0467 Position (kb) 451 452 453Strain fitness (log2 ratio) -2 -1 0 1 2 3at 450.296 kb on + strandat 450.304 kb on - strandat 450.320 kb on + strandat 450.382 kb on + strandat 450.394 kb on - strand, within Dshi_0465at 450.427 kb on + strand, within Dshi_0465at 450.483 kb on - strand, within Dshi_0465at 450.672 kb on - strand, within Dshi_0465at 450.745 kb on + strand, within Dshi_0465at 450.910 kb on - strand, within Dshi_0465at 450.937 kb on - strand, within Dshi_0465at 450.942 kb on + strand, within Dshi_0465at 450.947 kb on + strand, within Dshi_0465at 450.975 kb on + strandat 451.018 kb on + strandat 451.057 kb on - strandat 451.105 kb on + strandat 451.105 kb on + strandat 451.110 kb on + strandat 451.118 kb on - strandat 451.162 kb on - strand, within Dshi_0466at 451.210 kb on + strand, within Dshi_0466at 451.210 kb on + strand, within Dshi_0466at 451.220 kb on - strand, within Dshi_0466at 451.222 kb on + strand, within Dshi_0466at 451.222 kb on + strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.240 kb on + strand, within Dshi_0466at 451.248 kb on - strand, within Dshi_0466at 451.250 kb on + strand, within Dshi_0466at 451.281 kb on - strand, within Dshi_0466at 451.313 kb on + strand, within Dshi_0466at 451.340 kb on - strand, within Dshi_0466at 451.340 kb on - strand, within Dshi_0466at 451.369 kb on - strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.437 kb on - strand, within Dshi_0466at 451.439 kb on + strand, within Dshi_0466at 451.440 kb on + strand, within Dshi_0466at 451.452 kb on - strand, within Dshi_0466at 451.463 kb on + strand, within Dshi_0466at 451.463 kb on + strand, within Dshi_0466at 451.463 kb on + strand, within Dshi_0466at 451.548 kb on + strand, within Dshi_0466at 451.548 kb on - strand, within Dshi_0466at 451.578 kb on + strand, within Dshi_0466at 451.583 kb on + strand, within Dshi_0466at 451.586 kb on - strand, within Dshi_0466at 451.628 kb on - strand, within Dshi_0466at 451.681 kb on + strand, within Dshi_0466at 451.681 kb on + strand, within Dshi_0466at 451.681 kb on + strand, within Dshi_0466at 451.697 kb on + strand, within Dshi_0466at 451.697 kb on - strand, within Dshi_0466at 451.718 kb on - strand, within Dshi_0466at 451.720 kb on - strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.736 kb on - strand, within Dshi_0466at 451.736 kb on - strand, within Dshi_0466at 451.780 kb on - strand, within Dshi_0466at 451.780 kb on - strand, within Dshi_0466at 451.800 kb on + strand, within Dshi_0466at 451.808 kb on - strand, within Dshi_0466at 451.814 kb on + strand, within Dshi_0466at 451.814 kb on + strand, within Dshi_0466at 451.814 kb on + strand, within Dshi_0466at 451.815 kb on + strand, within Dshi_0466at 451.822 kb on - strand, within Dshi_0466at 451.822 kb on - strand, within Dshi_0466at 451.823 kb on - strand, within Dshi_0466at 451.840 kb on + strand, within Dshi_0466at 451.851 kb on - strand, within Dshi_0466at 451.878 kb on - strand, within Dshi_0466at 451.882 kb on - strand, within Dshi_0466at 451.912 kb on + strand, within Dshi_0466at 451.926 kb on - strand, within Dshi_0466at 451.956 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.993 kb on - strand, within Dshi_0466at 451.993 kb on - strand, within Dshi_0466at 452.026 kb on + strand, within Dshi_0466at 452.034 kb on - strand, within Dshi_0466at 452.037 kb on + strand, within Dshi_0466at 452.082 kb on + strand, within Dshi_0466at 452.090 kb on + strandat 452.122 kb on + strandat 452.122 kb on + strandat 452.127 kb on + strandat 452.127 kb on + strandat 452.130 kb on - strandat 452.135 kb on - strandat 452.135 kb on - strandat 452.156 kb on + strandat 452.172 kb on + strandat 452.182 kb on + strandat 452.190 kb on - strandat 452.190 kb on - strandat 452.190 kb on - strandat 452.214 kb on - strandat 452.215 kb on + strandat 452.253 kb on + strandat 452.253 kb on + strandat 452.266 kb on + strandat 452.310 kb on - strandat 452.317 kb on + strandat 452.440 kb on + strand, within Dshi_0467at 452.532 kb on - strand, within Dshi_0467at 452.548 kb on + strand, within Dshi_0467at 452.594 kb on - strand, within Dshi_0467at 452.631 kb on - strand, within Dshi_0467at 452.631 kb on - strand, within Dshi_0467at 452.633 kb on + strand, within Dshi_0467at 452.667 kb on + strand, within Dshi_0467at 452.686 kb on + strand, within Dshi_0467at 452.696 kb on + strand, within Dshi_0467at 452.701 kb on + strand, within Dshi_0467at 452.709 kb on - strand, within Dshi_0467at 452.735 kb on + strand, within Dshi_0467at 452.778 kb on - strand, within Dshi_0467at 452.814 kb on - strand, within Dshi_0467at 452.814 kb on - strand, within Dshi_0467at 452.847 kb on - strand, within Dshi_0467at 452.867 kb on + strand, within Dshi_0467at 452.904 kb on + strand, within Dshi_0467at 452.927 kb on + strand, within Dshi_0467at 452.943 kb on + strand, within Dshi_0467at 453.035 kb on + strand, within Dshi_0467at 453.051 kb on - strand, within Dshi_0467at 453.056 kb on - strand, within Dshi_0467at 453.105 kb on - strand, within Dshi_0467at 453.196 kb on + strand, within Dshi_0467

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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450,296 + +0.7
450,304 - -0.2
450,320 + -1.7
450,382 + -0.3
450,394 - Dshi_0465 0.11 +0.2
450,427 + Dshi_0465 0.16 +0.0
450,483 - Dshi_0465 0.24 -0.6
450,672 - Dshi_0465 0.50 -0.5
450,745 + Dshi_0465 0.60 +0.2
450,910 - Dshi_0465 0.83 -1.8
450,937 - Dshi_0465 0.87 -0.6
450,942 + Dshi_0465 0.87 +0.1
450,947 + Dshi_0465 0.88 -0.6
450,975 + -0.2
451,018 + +0.0
451,057 - -0.6
451,105 + +0.6
451,105 + -2.0
451,110 + -0.3
451,118 - +0.1
451,162 - Dshi_0466 0.10 -1.0
451,210 + Dshi_0466 0.14 -0.3
451,210 + Dshi_0466 0.14 -0.3
451,220 - Dshi_0466 0.15 -0.7
451,222 + Dshi_0466 0.15 +1.2
451,222 + Dshi_0466 0.15 -0.6
451,230 - Dshi_0466 0.16 +0.1
451,230 - Dshi_0466 0.16 -0.3
451,230 - Dshi_0466 0.16 -0.1
451,230 - Dshi_0466 0.16 +1.4
451,230 - Dshi_0466 0.16 -0.3
451,230 - Dshi_0466 0.16 -0.4
451,230 - Dshi_0466 0.16 -1.1
451,230 - Dshi_0466 0.16 -0.2
451,240 + Dshi_0466 0.17 +0.9
451,248 - Dshi_0466 0.18 +0.4
451,250 + Dshi_0466 0.18 -0.4
451,281 - Dshi_0466 0.20 +0.4
451,313 + Dshi_0466 0.23 +1.0
451,340 - Dshi_0466 0.25 -0.7
451,340 - Dshi_0466 0.25 -0.1
451,369 - Dshi_0466 0.28 +0.7
451,383 + Dshi_0466 0.29 -0.3
451,383 + Dshi_0466 0.29 +0.7
451,383 + Dshi_0466 0.29 +2.0
451,383 + Dshi_0466 0.29 +0.2
451,383 + Dshi_0466 0.29 -0.2
451,383 + Dshi_0466 0.29 +0.2
451,383 + Dshi_0466 0.29 -1.0
451,383 + Dshi_0466 0.29 +0.0
451,383 + Dshi_0466 0.29 -0.0
451,383 + Dshi_0466 0.29 -1.0
451,383 + Dshi_0466 0.29 -1.4
451,383 + Dshi_0466 0.29 -0.3
451,383 + Dshi_0466 0.29 -0.8
451,391 - Dshi_0466 0.30 -0.4
451,391 - Dshi_0466 0.30 +0.2
451,391 - Dshi_0466 0.30 +0.4
451,391 - Dshi_0466 0.30 -0.1
451,391 - Dshi_0466 0.30 +0.4
451,391 - Dshi_0466 0.30 +0.7
451,391 - Dshi_0466 0.30 -0.5
451,391 - Dshi_0466 0.30 -2.0
451,391 - Dshi_0466 0.30 -0.8
451,391 - Dshi_0466 0.30 -0.3
451,391 - Dshi_0466 0.30 -0.4
451,391 - Dshi_0466 0.30 +0.4
451,391 - Dshi_0466 0.30 +0.6
451,437 - Dshi_0466 0.34 -1.0
451,439 + Dshi_0466 0.34 -0.3
451,440 + Dshi_0466 0.34 -0.7
451,452 - Dshi_0466 0.35 +0.4
451,463 + Dshi_0466 0.36 -0.2
451,463 + Dshi_0466 0.36 +0.2
451,463 + Dshi_0466 0.36 -1.0
451,548 + Dshi_0466 0.43 -1.0
451,548 - Dshi_0466 0.43 -1.4
451,578 + Dshi_0466 0.46 +0.1
451,583 + Dshi_0466 0.46 +0.2
451,586 - Dshi_0466 0.47 -0.3
451,628 - Dshi_0466 0.50 -0.7
451,681 + Dshi_0466 0.55 -0.9
451,681 + Dshi_0466 0.55 -0.7
451,681 + Dshi_0466 0.55 +1.2
451,697 + Dshi_0466 0.56 -0.2
451,697 - Dshi_0466 0.56 +0.5
451,718 - Dshi_0466 0.58 -2.2
451,720 - Dshi_0466 0.58 +0.7
451,728 + Dshi_0466 0.59 +0.1
451,728 + Dshi_0466 0.59 +0.1
451,728 + Dshi_0466 0.59 +0.0
451,728 + Dshi_0466 0.59 -0.4
451,728 + Dshi_0466 0.59 -0.3
451,736 - Dshi_0466 0.60 -1.1
451,736 - Dshi_0466 0.60 -0.8
451,780 - Dshi_0466 0.63 -0.2
451,780 - Dshi_0466 0.63 -0.2
451,800 + Dshi_0466 0.65 -0.3
451,808 - Dshi_0466 0.66 -1.9
451,814 + Dshi_0466 0.66 +0.3
451,814 + Dshi_0466 0.66 -1.0
451,814 + Dshi_0466 0.66 -0.9
451,815 + Dshi_0466 0.66 +0.1
451,822 - Dshi_0466 0.67 +0.3
451,822 - Dshi_0466 0.67 -0.6
451,823 - Dshi_0466 0.67 -1.8
451,840 + Dshi_0466 0.69 -0.6
451,851 - Dshi_0466 0.70 -0.2
451,878 - Dshi_0466 0.72 -1.8
451,882 - Dshi_0466 0.72 +1.5
451,912 + Dshi_0466 0.75 -0.5
451,926 - Dshi_0466 0.76 +0.2
451,956 + Dshi_0466 0.79 -0.1
451,985 + Dshi_0466 0.81 -0.9
451,985 + Dshi_0466 0.81 -0.7
451,985 + Dshi_0466 0.81 +0.1
451,985 + Dshi_0466 0.81 -0.1
451,985 + Dshi_0466 0.81 -0.2
451,985 + Dshi_0466 0.81 -0.2
451,993 - Dshi_0466 0.82 -0.6
451,993 - Dshi_0466 0.82 -1.0
452,026 + Dshi_0466 0.85 -0.9
452,034 - Dshi_0466 0.85 +0.5
452,037 + Dshi_0466 0.86 -0.5
452,082 + Dshi_0466 0.90 +3.2
452,090 + -0.7
452,122 + -0.9
452,122 + -0.4
452,127 + +0.4
452,127 + -2.3
452,130 - -1.4
452,135 - -0.7
452,135 - -0.5
452,156 + +0.0
452,172 + -0.5
452,182 + +0.2
452,190 - -0.2
452,190 - +0.1
452,190 - -0.4
452,214 - -0.6
452,215 + +0.8
452,253 + +1.4
452,253 + +0.1
452,266 + -0.8
452,310 - -0.2
452,317 + -0.5
452,440 + Dshi_0467 0.11 -0.9
452,532 - Dshi_0467 0.15 -0.5
452,548 + Dshi_0467 0.15 -0.6
452,594 - Dshi_0467 0.17 -0.2
452,631 - Dshi_0467 0.19 -1.8
452,631 - Dshi_0467 0.19 -1.0
452,633 + Dshi_0467 0.19 -1.8
452,667 + Dshi_0467 0.21 -0.6
452,686 + Dshi_0467 0.21 -1.0
452,696 + Dshi_0467 0.22 -1.2
452,701 + Dshi_0467 0.22 -0.5
452,709 - Dshi_0467 0.22 -1.0
452,735 + Dshi_0467 0.24 -0.1
452,778 - Dshi_0467 0.25 -0.8
452,814 - Dshi_0467 0.27 +0.5
452,814 - Dshi_0467 0.27 +0.2
452,847 - Dshi_0467 0.28 -0.2
452,867 + Dshi_0467 0.29 +0.4
452,904 + Dshi_0467 0.31 +0.9
452,927 + Dshi_0467 0.32 +0.4
452,943 + Dshi_0467 0.33 -0.6
453,035 + Dshi_0467 0.37 -0.4
453,051 - Dshi_0467 0.37 +0.2
453,056 - Dshi_0467 0.38 -0.4
453,105 - Dshi_0467 0.40 -0.0
453,196 + Dshi_0467 0.44 -0.0

Or see this region's nucleotide sequence