Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0251 and Dshi_0252 are separated by 77 nucleotides Dshi_0252 and Dshi_0253 are separated by 55 nucleotides
Dshi_0251: Dshi_0251 - efflux transporter, RND family, MFP subunit (RefSeq), at 249,241 to 250,392
_0251
Dshi_0252: Dshi_0252 - transcriptional regulator, TetR family (RefSeq), at 250,470 to 251,144
_0252
Dshi_0253: Dshi_0253 - AMP-dependent synthetase and ligase (RefSeq), at 251,200 to 252,759
_0253
Position (kb) 250
251
252 Strain fitness (log2 ratio) -1
0
1 at 249.480 kb on + strand, within Dshi_0251 at 249.725 kb on - strand, within Dshi_0251 at 249.731 kb on + strand, within Dshi_0251 at 249.939 kb on - strand, within Dshi_0251 at 250.245 kb on - strand, within Dshi_0251 at 250.303 kb on + strand at 250.303 kb on + strand at 250.303 kb on + strand at 250.383 kb on + strand at 250.555 kb on + strand, within Dshi_0252 at 250.612 kb on - strand, within Dshi_0252 at 250.675 kb on + strand, within Dshi_0252 at 250.728 kb on - strand, within Dshi_0252 at 250.801 kb on + strand, within Dshi_0252 at 250.823 kb on - strand, within Dshi_0252 at 251.019 kb on + strand, within Dshi_0252 at 251.146 kb on - strand at 251.185 kb on - strand at 251.227 kb on + strand at 251.244 kb on - strand at 251.273 kb on - strand at 251.351 kb on - strand at 251.375 kb on + strand, within Dshi_0253 at 251.422 kb on + strand, within Dshi_0253 at 251.497 kb on - strand, within Dshi_0253 at 251.601 kb on + strand, within Dshi_0253 at 251.664 kb on + strand, within Dshi_0253 at 251.751 kb on + strand, within Dshi_0253 at 251.751 kb on + strand, within Dshi_0253 at 251.782 kb on - strand, within Dshi_0253 at 251.832 kb on + strand, within Dshi_0253 at 251.832 kb on + strand, within Dshi_0253 at 251.840 kb on - strand, within Dshi_0253 at 251.840 kb on - strand, within Dshi_0253 at 251.899 kb on - strand, within Dshi_0253 at 251.901 kb on + strand, within Dshi_0253 at 251.917 kb on + strand, within Dshi_0253 at 251.925 kb on - strand, within Dshi_0253 at 251.969 kb on - strand, within Dshi_0253 at 252.026 kb on + strand, within Dshi_0253 at 252.051 kb on + strand, within Dshi_0253
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 249,480 + Dshi_0251 0.21 +0.2 249,725 - Dshi_0251 0.42 -0.1 249,731 + Dshi_0251 0.43 -0.4 249,939 - Dshi_0251 0.61 -0.1 250,245 - Dshi_0251 0.87 -0.5 250,303 + +1.0 250,303 + -0.1 250,303 + +0.8 250,383 + +0.4 250,555 + Dshi_0252 0.13 +0.3 250,612 - Dshi_0252 0.21 -0.5 250,675 + Dshi_0252 0.30 -1.4 250,728 - Dshi_0252 0.38 -1.0 250,801 + Dshi_0252 0.49 -0.7 250,823 - Dshi_0252 0.52 +0.0 251,019 + Dshi_0252 0.81 -0.5 251,146 - +0.1 251,185 - +0.2 251,227 + -0.8 251,244 - +0.8 251,273 - -0.1 251,351 - -0.1 251,375 + Dshi_0253 0.11 +0.0 251,422 + Dshi_0253 0.14 -1.2 251,497 - Dshi_0253 0.19 -0.4 251,601 + Dshi_0253 0.26 +1.0 251,664 + Dshi_0253 0.30 -0.8 251,751 + Dshi_0253 0.35 +0.4 251,751 + Dshi_0253 0.35 +1.2 251,782 - Dshi_0253 0.37 +0.2 251,832 + Dshi_0253 0.41 +0.2 251,832 + Dshi_0253 0.41 -0.2 251,840 - Dshi_0253 0.41 -0.5 251,840 - Dshi_0253 0.41 -0.7 251,899 - Dshi_0253 0.45 -0.7 251,901 + Dshi_0253 0.45 +0.3 251,917 + Dshi_0253 0.46 +1.7 251,925 - Dshi_0253 0.46 -0.9 251,969 - Dshi_0253 0.49 -0.3 252,026 + Dshi_0253 0.53 +0.4 252,051 + Dshi_0253 0.55 -1.0
Or see this region's nucleotide sequence