Experiment: m.b. Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0239 and Dshi_0240 overlap by 4 nucleotides Dshi_0240 and Dshi_0241 are separated by 148 nucleotides Dshi_0241 and Dshi_0242 are separated by 85 nucleotides
Dshi_0239: Dshi_0239 - Aspartate dehydrogenase (RefSeq), at 237,729 to 238,490
_0239
Dshi_0240: Dshi_0240 - Glutathione S-transferase domain (RefSeq), at 238,487 to 239,185
_0240
Dshi_0241: Dshi_0241 - large conductance mechanosensitive channel protein (RefSeq), at 239,334 to 239,729
_0241
Dshi_0242: Dshi_0242 - fatty acid hydroxylase (RefSeq), at 239,815 to 240,792
_0242
Position (kb) 239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.379 kb on + strand, within Dshi_0239 at 238.388 kb on + strand, within Dshi_0239 at 238.425 kb on - strand at 238.481 kb on - strand at 238.566 kb on - strand, within Dshi_0240 at 238.622 kb on + strand, within Dshi_0240 at 238.704 kb on + strand, within Dshi_0240 at 239.072 kb on - strand, within Dshi_0240 at 239.086 kb on + strand, within Dshi_0240 at 239.086 kb on + strand, within Dshi_0240 at 239.086 kb on + strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.120 kb on - strand at 239.120 kb on - strand at 239.143 kb on - strand at 239.176 kb on + strand at 239.183 kb on + strand at 239.250 kb on + strand at 239.303 kb on - strand at 239.316 kb on + strand at 239.316 kb on + strand at 239.316 kb on + strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.385 kb on + strand, within Dshi_0241 at 239.474 kb on - strand, within Dshi_0241 at 239.500 kb on + strand, within Dshi_0241 at 239.500 kb on + strand, within Dshi_0241 at 239.500 kb on + strand, within Dshi_0241 at 239.508 kb on - strand, within Dshi_0241 at 239.508 kb on - strand, within Dshi_0241 at 239.508 kb on - strand, within Dshi_0241 at 239.517 kb on + strand, within Dshi_0241 at 239.723 kb on + strand at 239.726 kb on - strand at 239.731 kb on - strand at 239.778 kb on + strand at 239.778 kb on + strand at 239.785 kb on - strand at 239.813 kb on + strand at 239.894 kb on - strand at 239.900 kb on + strand at 239.931 kb on - strand, within Dshi_0242 at 239.951 kb on - strand, within Dshi_0242 at 240.001 kb on - strand, within Dshi_0242 at 240.062 kb on - strand, within Dshi_0242 at 240.062 kb on - strand, within Dshi_0242 at 240.229 kb on - strand, within Dshi_0242 at 240.256 kb on + strand, within Dshi_0242 at 240.264 kb on - strand, within Dshi_0242 at 240.341 kb on + strand, within Dshi_0242 at 240.365 kb on + strand, within Dshi_0242 at 240.378 kb on - strand, within Dshi_0242 at 240.477 kb on - strand, within Dshi_0242 at 240.483 kb on + strand, within Dshi_0242 at 240.491 kb on + strand, within Dshi_0242 at 240.518 kb on + strand, within Dshi_0242 at 240.656 kb on - strand, within Dshi_0242
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml remove 238,379 + Dshi_0239 0.85 -0.2 238,388 + Dshi_0239 0.86 -0.2 238,425 - +1.2 238,481 - +0.6 238,566 - Dshi_0240 0.11 +0.3 238,622 + Dshi_0240 0.19 -0.3 238,704 + Dshi_0240 0.31 -0.4 239,072 - Dshi_0240 0.84 +0.0 239,086 + Dshi_0240 0.86 +0.2 239,086 + Dshi_0240 0.86 -0.1 239,086 + Dshi_0240 0.86 +0.6 239,094 - Dshi_0240 0.87 +0.4 239,094 - Dshi_0240 0.87 -0.9 239,094 - Dshi_0240 0.87 -0.1 239,094 - Dshi_0240 0.87 -0.2 239,094 - Dshi_0240 0.87 +2.2 239,120 - +0.3 239,120 - +1.2 239,143 - +1.3 239,176 + -0.1 239,183 + -0.4 239,250 + -0.8 239,303 - -2.0 239,316 + -0.2 239,316 + -0.1 239,316 + -0.5 239,324 - +0.3 239,324 - -1.5 239,324 - -1.9 239,324 - -0.7 239,324 - -1.1 239,385 + Dshi_0241 0.13 -0.9 239,474 - Dshi_0241 0.35 -0.5 239,500 + Dshi_0241 0.42 -0.5 239,500 + Dshi_0241 0.42 -1.2 239,500 + Dshi_0241 0.42 +0.6 239,508 - Dshi_0241 0.44 -0.2 239,508 - Dshi_0241 0.44 -1.2 239,508 - Dshi_0241 0.44 -0.6 239,517 + Dshi_0241 0.46 -1.0 239,723 + -0.6 239,726 - -0.8 239,731 - -0.6 239,778 + +0.0 239,778 + -1.2 239,785 - -0.0 239,813 + -0.4 239,894 - -0.7 239,900 + -0.3 239,931 - Dshi_0242 0.12 +0.4 239,951 - Dshi_0242 0.14 +2.0 240,001 - Dshi_0242 0.19 -1.2 240,062 - Dshi_0242 0.25 -0.4 240,062 - Dshi_0242 0.25 +1.5 240,229 - Dshi_0242 0.42 -0.4 240,256 + Dshi_0242 0.45 +0.2 240,264 - Dshi_0242 0.46 -2.4 240,341 + Dshi_0242 0.54 +0.6 240,365 + Dshi_0242 0.56 -0.8 240,378 - Dshi_0242 0.58 +0.2 240,477 - Dshi_0242 0.68 -0.0 240,483 + Dshi_0242 0.68 -0.0 240,491 + Dshi_0242 0.69 +0.3 240,518 + Dshi_0242 0.72 -0.2 240,656 - Dshi_0242 0.86 -0.4
Or see this region's nucleotide sequence