Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0222

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0221 and Dshi_0222 are separated by 18 nucleotidesDshi_0222 and Dshi_0223 are separated by 90 nucleotides Dshi_0221: Dshi_0221 - DNA topoisomerase IV, A subunit (RefSeq), at 217,806 to 220,139 _0221 Dshi_0222: Dshi_0222 - hypothetical protein (RefSeq), at 220,158 to 220,832 _0222 Dshi_0223: Dshi_0223 - translation elongation factor Tu (RefSeq), at 220,923 to 222,098 _0223 Position (kb) 220 221Strain fitness (log2 ratio) -1 0 1at 220.158 kb on + strandat 220.716 kb on - strand, within Dshi_0222at 220.770 kb on - strandat 220.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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220,158 + -1.3
220,716 - Dshi_0222 0.83 -0.6
220,770 - +0.2
220,795 - +0.3

Or see this region's nucleotide sequence