Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0112

Experiment: m.b. Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0111 and Dshi_0112 are separated by 20 nucleotidesDshi_0112 and Dshi_0113 are separated by 55 nucleotidesDshi_0113 and Dshi_0114 are separated by 86 nucleotides Dshi_0111: Dshi_0111 - major facilitator superfamily MFS_1 (RefSeq), at 109,578 to 110,813 _0111 Dshi_0112: Dshi_0112 - AFG1-family ATPase (RefSeq), at 110,834 to 112,003 _0112 Dshi_0113: Dshi_0113 - Redoxin domain protein (RefSeq), at 112,059 to 112,541 _0113 Dshi_0114: Dshi_0114 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 112,628 to 113,833 _0114 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -2 -1 0 1at 109.862 kb on - strand, within Dshi_0111at 109.886 kb on + strand, within Dshi_0111at 109.912 kb on - strand, within Dshi_0111at 109.974 kb on - strand, within Dshi_0111at 110.010 kb on - strand, within Dshi_0111at 110.023 kb on - strand, within Dshi_0111at 110.117 kb on - strand, within Dshi_0111at 110.138 kb on + strand, within Dshi_0111at 110.149 kb on + strand, within Dshi_0111at 110.169 kb on + strand, within Dshi_0111at 110.189 kb on + strand, within Dshi_0111at 110.232 kb on + strand, within Dshi_0111at 110.239 kb on - strand, within Dshi_0111at 110.248 kb on + strand, within Dshi_0111at 110.334 kb on + strand, within Dshi_0111at 110.357 kb on - strand, within Dshi_0111at 110.462 kb on - strand, within Dshi_0111at 110.489 kb on - strand, within Dshi_0111at 110.516 kb on + strand, within Dshi_0111at 110.557 kb on + strand, within Dshi_0111at 110.697 kb on - strandat 110.713 kb on - strandat 110.773 kb on + strandat 110.798 kb on - strandat 110.896 kb on + strandat 110.943 kb on + strandat 110.943 kb on + strandat 110.982 kb on + strand, within Dshi_0112at 111.033 kb on - strand, within Dshi_0112at 111.120 kb on + strand, within Dshi_0112at 111.166 kb on + strand, within Dshi_0112at 111.395 kb on - strand, within Dshi_0112at 111.459 kb on + strand, within Dshi_0112at 111.525 kb on + strand, within Dshi_0112at 111.613 kb on - strand, within Dshi_0112at 111.614 kb on + strand, within Dshi_0112at 111.745 kb on + strand, within Dshi_0112at 111.750 kb on + strand, within Dshi_0112at 111.760 kb on + strand, within Dshi_0112at 111.837 kb on + strand, within Dshi_0112at 112.006 kb on - strandat 112.025 kb on + strandat 112.186 kb on - strand, within Dshi_0113at 112.288 kb on + strand, within Dshi_0113at 112.513 kb on + strandat 112.586 kb on + strandat 112.587 kb on - strandat 112.594 kb on - strandat 112.604 kb on - strandat 112.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 0.005 mg/ml
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109,862 - Dshi_0111 0.23 +0.9
109,886 + Dshi_0111 0.25 -0.0
109,912 - Dshi_0111 0.27 +0.1
109,974 - Dshi_0111 0.32 +0.0
110,010 - Dshi_0111 0.35 -1.2
110,023 - Dshi_0111 0.36 +0.4
110,117 - Dshi_0111 0.44 -0.2
110,138 + Dshi_0111 0.45 -0.2
110,149 + Dshi_0111 0.46 -0.8
110,169 + Dshi_0111 0.48 +1.0
110,189 + Dshi_0111 0.49 -0.9
110,232 + Dshi_0111 0.53 +0.2
110,239 - Dshi_0111 0.53 -0.7
110,248 + Dshi_0111 0.54 +0.2
110,334 + Dshi_0111 0.61 -0.1
110,357 - Dshi_0111 0.63 -0.0
110,462 - Dshi_0111 0.72 -0.1
110,489 - Dshi_0111 0.74 +0.5
110,516 + Dshi_0111 0.76 -0.4
110,557 + Dshi_0111 0.79 +1.0
110,697 - +0.3
110,713 - -1.4
110,773 + -0.1
110,798 - -0.2
110,896 + +0.2
110,943 + -1.7
110,943 + -1.1
110,982 + Dshi_0112 0.13 -0.8
111,033 - Dshi_0112 0.17 -0.6
111,120 + Dshi_0112 0.24 -0.6
111,166 + Dshi_0112 0.28 -2.0
111,395 - Dshi_0112 0.48 -1.6
111,459 + Dshi_0112 0.53 +0.2
111,525 + Dshi_0112 0.59 -0.5
111,613 - Dshi_0112 0.67 +0.2
111,614 + Dshi_0112 0.67 -0.6
111,745 + Dshi_0112 0.78 -1.6
111,750 + Dshi_0112 0.78 -0.6
111,760 + Dshi_0112 0.79 -1.3
111,837 + Dshi_0112 0.86 -1.0
112,006 - +0.2
112,025 + -0.1
112,186 - Dshi_0113 0.26 -0.2
112,288 + Dshi_0113 0.47 -0.3
112,513 + +1.4
112,586 + +0.8
112,587 - -0.4
112,594 - -0.9
112,604 - -1.2
112,630 + -0.7

Or see this region's nucleotide sequence