Experiment: Hydroxide 0.05 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_439 and Pf6N2E2_440 are separated by 30 nucleotides Pf6N2E2_440 and Pf6N2E2_441 are separated by 203 nucleotides Pf6N2E2_441 and Pf6N2E2_442 are separated by 109 nucleotides Pf6N2E2_442 and Pf6N2E2_443 are separated by 0 nucleotides Pf6N2E2_443 and Pf6N2E2_444 are separated by 126 nucleotides
Pf6N2E2_439 - FIG00958580: hypothetical protein, at 504,871 to 505,041
_439
Pf6N2E2_440 - FIG00954920: hypothetical protein, at 505,072 to 505,374
_440
Pf6N2E2_441 - FIG00958773: hypothetical protein, at 505,578 to 505,928
_441
Pf6N2E2_442 - FIG00962345: hypothetical protein, at 506,038 to 506,268
_442
Pf6N2E2_443 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 506,269 to 506,550
_443
Pf6N2E2_444 - hypothetical protein, at 506,677 to 506,892
_444
Position (kb) 505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 504.856 kb on + strand at 504.857 kb on - strand at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.010 kb on + strand, within Pf6N2E2_439 at 505.011 kb on - strand, within Pf6N2E2_439 at 505.011 kb on - strand, within Pf6N2E2_439 at 505.022 kb on + strand, within Pf6N2E2_439 at 505.022 kb on + strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.023 kb on - strand, within Pf6N2E2_439 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.242 kb on - strand, within Pf6N2E2_440 at 505.269 kb on + strand, within Pf6N2E2_440 at 505.440 kb on + strand at 505.441 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.457 kb on - strand at 505.459 kb on + strand at 505.491 kb on - strand at 505.491 kb on - strand at 505.511 kb on + strand at 505.512 kb on - strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.577 kb on + strand at 505.692 kb on + strand, within Pf6N2E2_441 at 505.693 kb on - strand, within Pf6N2E2_441 at 505.971 kb on + strand at 505.971 kb on + strand at 505.972 kb on - strand at 505.972 kb on - strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.024 kb on + strand at 506.025 kb on - strand at 506.025 kb on - strand at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.079 kb on + strand, within Pf6N2E2_442 at 506.080 kb on - strand, within Pf6N2E2_442 at 506.080 kb on - strand, within Pf6N2E2_442 at 506.223 kb on + strand, within Pf6N2E2_442 at 506.270 kb on + strand at 506.270 kb on + strand at 506.270 kb on + strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.271 kb on - strand at 506.414 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.483 kb on + strand, within Pf6N2E2_443 at 506.484 kb on - strand, within Pf6N2E2_443 at 506.526 kb on + strand at 506.526 kb on + strand at 506.527 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.591 kb on - strand at 506.615 kb on + strand at 506.615 kb on + strand at 506.616 kb on - strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.659 kb on + strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.660 kb on - strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.662 kb on + strand at 506.679 kb on - strand at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.819 kb on + strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.820 kb on - strand, within Pf6N2E2_444 at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.894 kb on + strand at 506.895 kb on - strand at 506.895 kb on - strand at 506.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxide 0.05 M remove 504,856 + +1.1 504,857 - +0.1 505,010 + Pf6N2E2_439 0.81 -1.2 505,010 + Pf6N2E2_439 0.81 -0.2 505,010 + Pf6N2E2_439 0.81 -0.3 505,010 + Pf6N2E2_439 0.81 +0.2 505,011 - Pf6N2E2_439 0.82 -2.2 505,011 - Pf6N2E2_439 0.82 -0.1 505,022 + Pf6N2E2_439 0.88 +0.4 505,022 + Pf6N2E2_439 0.88 +0.8 505,023 - Pf6N2E2_439 0.89 -1.3 505,023 - Pf6N2E2_439 0.89 -0.1 505,023 - Pf6N2E2_439 0.89 -0.1 505,023 - Pf6N2E2_439 0.89 +0.3 505,242 - Pf6N2E2_440 0.56 -0.1 505,242 - Pf6N2E2_440 0.56 +1.3 505,242 - Pf6N2E2_440 0.56 +1.3 505,242 - Pf6N2E2_440 0.56 -3.3 505,269 + Pf6N2E2_440 0.65 -1.5 505,440 + +0.1 505,441 - -0.6 505,457 - +1.5 505,457 - -0.8 505,457 - +0.7 505,459 + +1.5 505,491 - +0.4 505,491 - +0.4 505,511 + -0.1 505,512 - +0.1 505,577 + +0.4 505,577 + +0.1 505,577 + +0.3 505,577 + +0.4 505,577 + -1.8 505,692 + Pf6N2E2_441 0.32 -0.9 505,693 - Pf6N2E2_441 0.33 -0.9 505,971 + -0.3 505,971 + -0.4 505,972 - -1.1 505,972 - -0.4 506,024 + -0.2 506,024 + -0.0 506,024 + -0.8 506,024 + +0.1 506,025 - +0.3 506,025 - +0.9 506,079 + Pf6N2E2_442 0.18 -0.6 506,079 + Pf6N2E2_442 0.18 -1.1 506,079 + Pf6N2E2_442 0.18 +1.7 506,079 + Pf6N2E2_442 0.18 -1.7 506,079 + Pf6N2E2_442 0.18 +0.3 506,080 - Pf6N2E2_442 0.18 -0.6 506,080 - Pf6N2E2_442 0.18 +0.3 506,223 + Pf6N2E2_442 0.80 -1.4 506,270 + +0.5 506,270 + +0.5 506,270 + -0.4 506,271 - -0.6 506,271 - -0.1 506,271 - -1.5 506,414 + Pf6N2E2_443 0.51 -0.1 506,483 + Pf6N2E2_443 0.76 -1.1 506,483 + Pf6N2E2_443 0.76 +1.2 506,484 - Pf6N2E2_443 0.76 -0.4 506,526 + -0.4 506,526 + -1.7 506,527 - -1.5 506,591 - +0.8 506,591 - +0.5 506,591 - +0.6 506,615 + -0.1 506,615 + -0.9 506,616 - -0.0 506,659 + +1.0 506,659 + +0.6 506,659 + +0.2 506,659 + -0.5 506,659 + +0.3 506,660 - +0.5 506,660 - -0.5 506,660 - -1.5 506,662 + +0.2 506,662 + -1.3 506,662 + +0.2 506,662 + -1.7 506,679 - -0.6 506,819 + Pf6N2E2_444 0.66 -0.2 506,819 + Pf6N2E2_444 0.66 -0.9 506,819 + Pf6N2E2_444 0.66 +0.9 506,819 + Pf6N2E2_444 0.66 -0.1 506,820 - Pf6N2E2_444 0.66 +0.6 506,820 - Pf6N2E2_444 0.66 +0.3 506,820 - Pf6N2E2_444 0.66 +0.1 506,894 + -1.5 506,894 + +0.7 506,894 + +0.5 506,894 + +1.5 506,894 + +0.8 506,894 + -0.2 506,895 - +0.5 506,895 - +0.2 506,895 - -0.5
Or see this region's nucleotide sequence