Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4404

Experiment: Hydroxide 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4403 and Pf6N2E2_4404 are separated by 0 nucleotidesPf6N2E2_4404 and Pf6N2E2_4405 are separated by 265 nucleotides Pf6N2E2_4403 - FIG00963784: hypothetical protein, at 5,135,221 to 5,136,435 _4403 Pf6N2E2_4404 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 5,136,436 to 5,137,929 _4404 Pf6N2E2_4405 - sensor histidine kinase, at 5,138,195 to 5,139,472 _4405 Position (kb) 5136 5137 5138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5135.694 kb on + strand, within Pf6N2E2_4403at 5135.694 kb on + strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.695 kb on - strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.740 kb on + strand, within Pf6N2E2_4403at 5135.887 kb on + strand, within Pf6N2E2_4403at 5135.888 kb on - strand, within Pf6N2E2_4403at 5135.899 kb on + strand, within Pf6N2E2_4403at 5135.900 kb on - strand, within Pf6N2E2_4403at 5136.037 kb on + strand, within Pf6N2E2_4403at 5136.037 kb on + strand, within Pf6N2E2_4403at 5136.038 kb on - strand, within Pf6N2E2_4403at 5136.038 kb on - strand, within Pf6N2E2_4403at 5136.052 kb on + strand, within Pf6N2E2_4403at 5136.052 kb on + strand, within Pf6N2E2_4403at 5136.053 kb on - strand, within Pf6N2E2_4403at 5136.053 kb on - strand, within Pf6N2E2_4403at 5136.054 kb on + strand, within Pf6N2E2_4403at 5136.054 kb on + strand, within Pf6N2E2_4403at 5136.067 kb on + strand, within Pf6N2E2_4403at 5136.067 kb on + strand, within Pf6N2E2_4403at 5136.068 kb on - strand, within Pf6N2E2_4403at 5136.135 kb on - strand, within Pf6N2E2_4403at 5136.180 kb on + strand, within Pf6N2E2_4403at 5136.202 kb on + strand, within Pf6N2E2_4403at 5136.202 kb on + strand, within Pf6N2E2_4403at 5136.202 kb on + strand, within Pf6N2E2_4403at 5136.203 kb on - strand, within Pf6N2E2_4403at 5136.316 kb on + strandat 5136.317 kb on - strandat 5136.748 kb on - strand, within Pf6N2E2_4404at 5136.878 kb on + strand, within Pf6N2E2_4404at 5136.879 kb on - strand, within Pf6N2E2_4404at 5136.934 kb on + strand, within Pf6N2E2_4404at 5136.935 kb on - strand, within Pf6N2E2_4404at 5137.060 kb on + strand, within Pf6N2E2_4404at 5137.061 kb on - strand, within Pf6N2E2_4404at 5137.061 kb on - strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.348 kb on + strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.349 kb on - strand, within Pf6N2E2_4404at 5137.894 kb on + strandat 5137.895 kb on - strandat 5137.895 kb on - strandat 5137.980 kb on + strandat 5137.980 kb on + strandat 5137.981 kb on - strandat 5138.135 kb on + strandat 5138.135 kb on + strandat 5138.136 kb on - strandat 5138.136 kb on - strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.252 kb on + strandat 5138.253 kb on - strandat 5138.253 kb on - strandat 5138.253 kb on - strandat 5138.253 kb on - strandat 5138.315 kb on + strandat 5138.315 kb on + strandat 5138.315 kb on + strandat 5138.315 kb on + strandat 5138.315 kb on + strandat 5138.316 kb on - strandat 5138.316 kb on - strandat 5138.316 kb on - strandat 5138.316 kb on - strandat 5138.342 kb on + strand, within Pf6N2E2_4405at 5138.342 kb on + strand, within Pf6N2E2_4405at 5138.342 kb on + strand, within Pf6N2E2_4405at 5138.342 kb on + strand, within Pf6N2E2_4405at 5138.343 kb on - strand, within Pf6N2E2_4405at 5138.343 kb on - strand, within Pf6N2E2_4405at 5138.343 kb on - strand, within Pf6N2E2_4405at 5138.459 kb on + strand, within Pf6N2E2_4405at 5138.459 kb on + strand, within Pf6N2E2_4405at 5138.459 kb on + strand, within Pf6N2E2_4405at 5138.459 kb on + strand, within Pf6N2E2_4405at 5138.459 kb on + strand, within Pf6N2E2_4405at 5138.459 kb on + strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.460 kb on - strand, within Pf6N2E2_4405at 5138.462 kb on + strand, within Pf6N2E2_4405at 5138.462 kb on + strand, within Pf6N2E2_4405at 5138.463 kb on - strand, within Pf6N2E2_4405at 5138.463 kb on - strand, within Pf6N2E2_4405at 5138.720 kb on + strand, within Pf6N2E2_4405at 5138.720 kb on + strand, within Pf6N2E2_4405at 5138.843 kb on + strand, within Pf6N2E2_4405at 5138.843 kb on + strand, within Pf6N2E2_4405at 5138.843 kb on + strand, within Pf6N2E2_4405at 5138.844 kb on - strand, within Pf6N2E2_4405

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxide 0.05 M
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5,135,694 + Pf6N2E2_4403 0.39 -0.1
5,135,694 + Pf6N2E2_4403 0.39 -1.4
5,135,695 - Pf6N2E2_4403 0.39 +0.6
5,135,695 - Pf6N2E2_4403 0.39 +0.0
5,135,695 - Pf6N2E2_4403 0.39 -0.4
5,135,695 - Pf6N2E2_4403 0.39 +0.1
5,135,695 - Pf6N2E2_4403 0.39 -0.8
5,135,695 - Pf6N2E2_4403 0.39 +0.2
5,135,695 - Pf6N2E2_4403 0.39 -2.7
5,135,695 - Pf6N2E2_4403 0.39 +0.8
5,135,695 - Pf6N2E2_4403 0.39 +1.7
5,135,740 + Pf6N2E2_4403 0.43 -0.3
5,135,740 + Pf6N2E2_4403 0.43 +0.8
5,135,740 + Pf6N2E2_4403 0.43 +0.8
5,135,887 + Pf6N2E2_4403 0.55 +0.7
5,135,888 - Pf6N2E2_4403 0.55 +0.9
5,135,899 + Pf6N2E2_4403 0.56 +1.4
5,135,900 - Pf6N2E2_4403 0.56 -0.4
5,136,037 + Pf6N2E2_4403 0.67 -0.6
5,136,037 + Pf6N2E2_4403 0.67 -0.1
5,136,038 - Pf6N2E2_4403 0.67 -0.2
5,136,038 - Pf6N2E2_4403 0.67 +0.2
5,136,052 + Pf6N2E2_4403 0.68 +0.5
5,136,052 + Pf6N2E2_4403 0.68 -0.3
5,136,053 - Pf6N2E2_4403 0.68 -0.5
5,136,053 - Pf6N2E2_4403 0.68 -1.2
5,136,054 + Pf6N2E2_4403 0.69 +0.5
5,136,054 + Pf6N2E2_4403 0.69 -0.2
5,136,067 + Pf6N2E2_4403 0.70 +0.7
5,136,067 + Pf6N2E2_4403 0.70 -0.4
5,136,068 - Pf6N2E2_4403 0.70 +1.5
5,136,135 - Pf6N2E2_4403 0.75 +0.8
5,136,180 + Pf6N2E2_4403 0.79 -1.3
5,136,202 + Pf6N2E2_4403 0.81 +0.0
5,136,202 + Pf6N2E2_4403 0.81 +0.5
5,136,202 + Pf6N2E2_4403 0.81 +0.9
5,136,203 - Pf6N2E2_4403 0.81 -0.1
5,136,316 + +0.9
5,136,317 - -0.2
5,136,748 - Pf6N2E2_4404 0.21 +0.5
5,136,878 + Pf6N2E2_4404 0.30 +0.5
5,136,879 - Pf6N2E2_4404 0.30 +0.9
5,136,934 + Pf6N2E2_4404 0.33 -0.2
5,136,935 - Pf6N2E2_4404 0.33 +1.3
5,137,060 + Pf6N2E2_4404 0.42 +0.3
5,137,061 - Pf6N2E2_4404 0.42 -0.4
5,137,061 - Pf6N2E2_4404 0.42 +0.3
5,137,348 + Pf6N2E2_4404 0.61 +0.6
5,137,348 + Pf6N2E2_4404 0.61 -1.4
5,137,348 + Pf6N2E2_4404 0.61 +1.3
5,137,348 + Pf6N2E2_4404 0.61 +1.5
5,137,349 - Pf6N2E2_4404 0.61 +0.4
5,137,349 - Pf6N2E2_4404 0.61 +0.3
5,137,349 - Pf6N2E2_4404 0.61 +0.2
5,137,349 - Pf6N2E2_4404 0.61 +0.9
5,137,349 - Pf6N2E2_4404 0.61 +0.6
5,137,349 - Pf6N2E2_4404 0.61 +0.6
5,137,894 + +0.2
5,137,895 - +0.5
5,137,895 - -0.5
5,137,980 + +0.7
5,137,980 + +1.3
5,137,981 - -0.3
5,138,135 + -0.1
5,138,135 + +0.2
5,138,136 - -0.4
5,138,136 - +0.8
5,138,252 + +0.7
5,138,252 + +0.2
5,138,252 + -0.2
5,138,252 + -0.9
5,138,252 + +0.6
5,138,252 + +0.4
5,138,252 + +0.9
5,138,252 + -0.1
5,138,252 + +1.7
5,138,252 + -0.7
5,138,252 + +0.5
5,138,253 - +0.0
5,138,253 - +0.0
5,138,253 - -0.9
5,138,253 - +0.3
5,138,315 + +0.5
5,138,315 + -0.5
5,138,315 + -0.2
5,138,315 + +0.4
5,138,315 + -2.3
5,138,316 - -0.0
5,138,316 - -0.3
5,138,316 - +0.5
5,138,316 - -0.6
5,138,342 + Pf6N2E2_4405 0.12 +0.8
5,138,342 + Pf6N2E2_4405 0.12 +0.6
5,138,342 + Pf6N2E2_4405 0.12 -0.2
5,138,342 + Pf6N2E2_4405 0.12 +0.8
5,138,343 - Pf6N2E2_4405 0.12 +1.1
5,138,343 - Pf6N2E2_4405 0.12 +0.8
5,138,343 - Pf6N2E2_4405 0.12 -0.3
5,138,459 + Pf6N2E2_4405 0.21 +2.4
5,138,459 + Pf6N2E2_4405 0.21 +0.5
5,138,459 + Pf6N2E2_4405 0.21 +0.4
5,138,459 + Pf6N2E2_4405 0.21 +1.5
5,138,459 + Pf6N2E2_4405 0.21 -0.2
5,138,459 + Pf6N2E2_4405 0.21 +0.5
5,138,460 - Pf6N2E2_4405 0.21 -0.3
5,138,460 - Pf6N2E2_4405 0.21 -0.9
5,138,460 - Pf6N2E2_4405 0.21 -0.5
5,138,460 - Pf6N2E2_4405 0.21 -0.2
5,138,460 - Pf6N2E2_4405 0.21 +0.0
5,138,460 - Pf6N2E2_4405 0.21 +0.4
5,138,460 - Pf6N2E2_4405 0.21 +1.5
5,138,462 + Pf6N2E2_4405 0.21 -0.1
5,138,462 + Pf6N2E2_4405 0.21 +0.7
5,138,463 - Pf6N2E2_4405 0.21 +0.6
5,138,463 - Pf6N2E2_4405 0.21 +0.1
5,138,720 + Pf6N2E2_4405 0.41 -0.1
5,138,720 + Pf6N2E2_4405 0.41 -0.8
5,138,843 + Pf6N2E2_4405 0.51 -3.1
5,138,843 + Pf6N2E2_4405 0.51 +0.4
5,138,843 + Pf6N2E2_4405 0.51 +1.4
5,138,844 - Pf6N2E2_4405 0.51 -0.6

Or see this region's nucleotide sequence