Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0851 and Ga0059261_0852 are separated by 288 nucleotides Ga0059261_0852 and Ga0059261_0853 are separated by 135 nucleotides Ga0059261_0853 and Ga0059261_0854 are separated by 35 nucleotides
Ga0059261_0851: Ga0059261_0851 - Alpha/beta hydrolase family, at 891,255 to 892,214
_0851
Ga0059261_0852: Ga0059261_0852 - Transcriptional regulators, at 892,503 to 892,979
_0852
Ga0059261_0853: Ga0059261_0853 - peroxiredoxin, Ohr subfamily, at 893,115 to 893,540
_0853
Ga0059261_0854: Ga0059261_0854 - Arabinose efflux permease, at 893,576 to 894,859
_0854
Position (kb) 893
894 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.203 kb on + strand at 892.203 kb on + strand at 892.203 kb on + strand at 892.203 kb on + strand at 892.203 kb on + strand at 892.203 kb on + strand at 892.204 kb on - strand at 892.204 kb on - strand at 892.204 kb on - strand at 892.204 kb on - strand at 892.361 kb on + strand at 892.361 kb on + strand at 892.361 kb on + strand at 892.362 kb on - strand at 892.362 kb on - strand at 892.362 kb on - strand at 892.362 kb on - strand at 892.404 kb on - strand at 892.404 kb on - strand at 892.444 kb on + strand at 892.444 kb on + strand at 892.445 kb on - strand at 892.449 kb on + strand at 892.449 kb on + strand at 892.449 kb on + strand at 892.449 kb on + strand at 892.449 kb on + strand at 892.449 kb on + strand at 892.450 kb on - strand at 892.450 kb on - strand at 892.538 kb on + strand at 892.546 kb on + strand at 892.546 kb on + strand at 892.546 kb on + strand at 892.546 kb on + strand at 892.546 kb on + strand at 892.546 kb on + strand at 892.546 kb on + strand at 892.547 kb on - strand at 892.547 kb on - strand at 892.547 kb on - strand at 892.547 kb on - strand at 892.547 kb on - strand at 892.547 kb on - strand at 892.849 kb on + strand, within Ga0059261_0852 at 892.849 kb on + strand, within Ga0059261_0852 at 892.849 kb on + strand, within Ga0059261_0852 at 892.849 kb on + strand, within Ga0059261_0852 at 892.850 kb on - strand, within Ga0059261_0852 at 892.850 kb on - strand, within Ga0059261_0852 at 892.850 kb on - strand, within Ga0059261_0852 at 892.850 kb on - strand, within Ga0059261_0852 at 892.858 kb on + strand, within Ga0059261_0852 at 892.859 kb on - strand, within Ga0059261_0852 at 892.891 kb on + strand, within Ga0059261_0852 at 892.891 kb on + strand, within Ga0059261_0852 at 892.891 kb on + strand, within Ga0059261_0852 at 892.891 kb on + strand, within Ga0059261_0852 at 892.892 kb on - strand, within Ga0059261_0852 at 892.892 kb on - strand, within Ga0059261_0852 at 892.892 kb on - strand, within Ga0059261_0852 at 892.892 kb on - strand, within Ga0059261_0852 at 892.892 kb on - strand, within Ga0059261_0852 at 892.922 kb on - strand, within Ga0059261_0852 at 892.930 kb on + strand, within Ga0059261_0852 at 892.930 kb on + strand, within Ga0059261_0852 at 892.931 kb on - strand, within Ga0059261_0852 at 892.931 kb on - strand, within Ga0059261_0852 at 893.066 kb on + strand at 893.067 kb on - strand at 893.067 kb on - strand at 893.067 kb on - strand at 893.067 kb on - strand at 893.067 kb on - strand at 893.127 kb on + strand at 893.127 kb on + strand at 893.128 kb on - strand at 893.128 kb on - strand at 893.274 kb on + strand, within Ga0059261_0853 at 893.487 kb on + strand, within Ga0059261_0853 at 893.487 kb on + strand, within Ga0059261_0853 at 893.488 kb on - strand, within Ga0059261_0853 at 893.616 kb on + strand at 893.616 kb on + strand at 893.616 kb on + strand at 893.705 kb on - strand, within Ga0059261_0854 at 893.841 kb on + strand, within Ga0059261_0854 at 893.871 kb on + strand, within Ga0059261_0854 at 893.872 kb on - strand, within Ga0059261_0854 at 893.872 kb on - strand, within Ga0059261_0854 at 893.907 kb on + strand, within Ga0059261_0854 at 893.907 kb on + strand, within Ga0059261_0854 at 893.907 kb on + strand, within Ga0059261_0854 at 893.907 kb on + strand, within Ga0059261_0854 at 893.907 kb on + strand, within Ga0059261_0854 at 893.908 kb on - strand, within Ga0059261_0854 at 893.908 kb on - strand, within Ga0059261_0854 at 893.908 kb on - strand, within Ga0059261_0854 at 893.908 kb on - strand, within Ga0059261_0854 at 893.908 kb on - strand, within Ga0059261_0854 at 893.968 kb on + strand, within Ga0059261_0854 at 893.968 kb on + strand, within Ga0059261_0854 at 893.969 kb on - strand, within Ga0059261_0854 at 893.969 kb on - strand, within Ga0059261_0854 at 894.132 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.423 kb on + strand, within Ga0059261_0854 at 894.424 kb on - strand, within Ga0059261_0854 at 894.424 kb on - strand, within Ga0059261_0854 at 894.424 kb on - strand at 894.424 kb on - strand, within Ga0059261_0854 at 894.424 kb on - strand, within Ga0059261_0854 at 894.424 kb on - strand at 894.424 kb on - strand at 894.459 kb on + strand, within Ga0059261_0854
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 892,203 + -0.3 892,203 + -1.0 892,203 + +0.2 892,203 + -0.6 892,203 + +0.2 892,203 + -0.3 892,204 - +0.2 892,204 - -0.0 892,204 - +0.2 892,204 - -0.8 892,361 + +0.3 892,361 + +0.0 892,361 + +0.1 892,362 - +0.9 892,362 - -0.1 892,362 - +1.5 892,362 - +0.7 892,404 - +0.0 892,404 - +0.5 892,444 + +0.2 892,444 + -0.0 892,445 - +1.9 892,449 + -0.9 892,449 + -0.2 892,449 + -0.8 892,449 + +0.5 892,449 + +0.1 892,449 + -0.6 892,450 - -0.1 892,450 - +0.3 892,538 + +0.5 892,546 + +0.1 892,546 + -1.7 892,546 + -0.3 892,546 + -1.7 892,546 + +0.1 892,546 + +0.1 892,546 + +0.3 892,547 - -0.1 892,547 - +0.4 892,547 - -1.1 892,547 - +0.4 892,547 - -1.1 892,547 - +1.8 892,849 + Ga0059261_0852 0.73 -0.6 892,849 + Ga0059261_0852 0.73 -0.4 892,849 + Ga0059261_0852 0.73 -1.7 892,849 + Ga0059261_0852 0.73 -1.0 892,850 - Ga0059261_0852 0.73 -0.2 892,850 - Ga0059261_0852 0.73 -1.4 892,850 - Ga0059261_0852 0.73 -1.5 892,850 - Ga0059261_0852 0.73 -0.4 892,858 + Ga0059261_0852 0.74 -0.8 892,859 - Ga0059261_0852 0.75 -1.0 892,891 + Ga0059261_0852 0.81 -0.1 892,891 + Ga0059261_0852 0.81 -0.7 892,891 + Ga0059261_0852 0.81 -0.4 892,891 + Ga0059261_0852 0.81 -0.8 892,892 - Ga0059261_0852 0.82 +1.5 892,892 - Ga0059261_0852 0.82 -2.1 892,892 - Ga0059261_0852 0.82 -0.7 892,892 - Ga0059261_0852 0.82 -0.4 892,892 - Ga0059261_0852 0.82 -0.8 892,922 - Ga0059261_0852 0.88 -1.9 892,930 + Ga0059261_0852 0.90 -0.4 892,930 + Ga0059261_0852 0.90 -1.3 892,931 - Ga0059261_0852 0.90 -0.7 892,931 - Ga0059261_0852 0.90 -0.5 893,066 + -1.1 893,067 - -0.7 893,067 - -0.4 893,067 - -0.7 893,067 - -0.5 893,067 - +0.5 893,127 + -0.5 893,127 + -1.1 893,128 - -2.1 893,128 - +0.3 893,274 + Ga0059261_0853 0.37 -1.1 893,487 + Ga0059261_0853 0.87 -0.7 893,487 + Ga0059261_0853 0.87 -0.4 893,488 - Ga0059261_0853 0.88 +0.0 893,616 + +0.7 893,616 + -0.1 893,616 + -0.9 893,705 - Ga0059261_0854 0.10 +0.1 893,841 + Ga0059261_0854 0.21 -1.1 893,871 + Ga0059261_0854 0.23 +0.1 893,872 - Ga0059261_0854 0.23 -0.8 893,872 - Ga0059261_0854 0.23 -0.3 893,907 + Ga0059261_0854 0.26 +0.6 893,907 + Ga0059261_0854 0.26 -1.3 893,907 + Ga0059261_0854 0.26 -0.4 893,907 + Ga0059261_0854 0.26 -0.4 893,907 + Ga0059261_0854 0.26 -0.5 893,908 - Ga0059261_0854 0.26 -0.3 893,908 - Ga0059261_0854 0.26 +2.1 893,908 - Ga0059261_0854 0.26 +0.5 893,908 - Ga0059261_0854 0.26 +0.6 893,908 - Ga0059261_0854 0.26 -0.7 893,968 + Ga0059261_0854 0.31 +1.1 893,968 + Ga0059261_0854 0.31 -0.9 893,969 - Ga0059261_0854 0.31 +0.2 893,969 - Ga0059261_0854 0.31 -0.7 894,132 + Ga0059261_0854 0.43 -0.1 894,423 + Ga0059261_0854 0.66 -0.3 894,423 + Ga0059261_0854 0.66 -0.1 894,423 + Ga0059261_0854 0.66 -0.5 894,423 + Ga0059261_0854 0.66 -0.5 894,423 + Ga0059261_0854 0.66 -0.6 894,423 + Ga0059261_0854 0.66 -0.7 894,423 + Ga0059261_0854 0.66 +0.3 894,424 - Ga0059261_0854 0.66 +0.7 894,424 - Ga0059261_0854 0.66 +0.9 894,424 - +0.5 894,424 - Ga0059261_0854 0.66 +0.1 894,424 - Ga0059261_0854 0.66 +0.7 894,424 - +2.2 894,424 - +0.9 894,459 + Ga0059261_0854 0.69 +0.2
Or see this region's nucleotide sequence