Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18925

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18915 and CSW01_18920 overlap by 104 nucleotidesCSW01_18920 and CSW01_18925 are separated by 173 nucleotidesCSW01_18925 and CSW01_18930 are separated by 341 nucleotides CSW01_18915: CSW01_18915 - DUF3612 domain-containing protein, at 904,872 to 906,389 _18915 CSW01_18920: CSW01_18920 - hypothetical protein, at 906,286 to 906,495 _18920 CSW01_18925: CSW01_18925 - sensor domain-containing diguanylate cyclase, at 906,669 to 908,042 _18925 CSW01_18930: CSW01_18930 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 908,384 to 908,992 _18930 Position (kb) 906 907 908 909Strain fitness (log2 ratio) -2 -1 0 1 2at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.757 kb on - strand, within CSW01_18915at 905.861 kb on + strand, within CSW01_18915at 905.874 kb on - strand, within CSW01_18915at 905.888 kb on + strand, within CSW01_18915at 905.921 kb on - strand, within CSW01_18915at 905.921 kb on - strand, within CSW01_18915at 905.989 kb on - strand, within CSW01_18915at 906.015 kb on + strand, within CSW01_18915at 906.015 kb on + strand, within CSW01_18915at 906.091 kb on + strand, within CSW01_18915at 906.165 kb on + strand, within CSW01_18915at 906.219 kb on + strand, within CSW01_18915at 906.284 kb on - strandat 906.297 kb on + strandat 906.425 kb on + strand, within CSW01_18920at 906.481 kb on + strandat 906.686 kb on + strandat 906.736 kb on - strandat 906.916 kb on + strand, within CSW01_18925at 906.916 kb on + strand, within CSW01_18925at 907.103 kb on + strand, within CSW01_18925at 907.103 kb on + strand, within CSW01_18925at 907.123 kb on - strand, within CSW01_18925at 907.200 kb on + strand, within CSW01_18925at 907.442 kb on + strand, within CSW01_18925at 907.442 kb on + strand, within CSW01_18925at 907.497 kb on + strand, within CSW01_18925at 907.505 kb on - strand, within CSW01_18925at 907.524 kb on - strand, within CSW01_18925at 907.575 kb on - strand, within CSW01_18925at 907.646 kb on + strand, within CSW01_18925at 907.754 kb on + strand, within CSW01_18925at 907.806 kb on - strand, within CSW01_18925at 907.846 kb on + strand, within CSW01_18925at 907.918 kb on + strandat 907.986 kb on + strandat 908.015 kb on + strandat 908.045 kb on - strandat 908.093 kb on - strandat 908.205 kb on + strandat 908.237 kb on + strandat 908.245 kb on - strandat 908.252 kb on - strandat 908.269 kb on + strandat 908.295 kb on - strandat 908.610 kb on + strand, within CSW01_18930at 908.618 kb on - strand, within CSW01_18930at 908.620 kb on + strand, within CSW01_18930at 908.620 kb on + strand, within CSW01_18930at 908.630 kb on + strand, within CSW01_18930at 908.703 kb on - strand, within CSW01_18930at 908.729 kb on + strand, within CSW01_18930at 908.737 kb on - strand, within CSW01_18930at 908.737 kb on - strand, within CSW01_18930at 908.758 kb on - strand, within CSW01_18930at 908.802 kb on + strand, within CSW01_18930at 908.810 kb on - strand, within CSW01_18930at 908.810 kb on - strand, within CSW01_18930at 908.906 kb on + strand, within CSW01_18930at 908.924 kb on - strand, within CSW01_18930

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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905,744 + CSW01_18915 0.57 -0.3
905,744 + CSW01_18915 0.57 -1.6
905,744 + CSW01_18915 0.57 +0.3
905,744 + CSW01_18915 0.57 +0.0
905,749 + CSW01_18915 0.58 +1.1
905,749 + CSW01_18915 0.58 -0.3
905,749 + CSW01_18915 0.58 +0.4
905,749 + CSW01_18915 0.58 -0.8
905,749 + CSW01_18915 0.58 +0.7
905,749 + CSW01_18915 0.58 -0.2
905,749 + CSW01_18915 0.58 -0.4
905,757 - CSW01_18915 0.58 -0.7
905,861 + CSW01_18915 0.65 +0.5
905,874 - CSW01_18915 0.66 +0.2
905,888 + CSW01_18915 0.67 +0.1
905,921 - CSW01_18915 0.69 -0.6
905,921 - CSW01_18915 0.69 +0.2
905,989 - CSW01_18915 0.74 +0.5
906,015 + CSW01_18915 0.75 +0.5
906,015 + CSW01_18915 0.75 +1.0
906,091 + CSW01_18915 0.80 -0.3
906,165 + CSW01_18915 0.85 +0.2
906,219 + CSW01_18915 0.89 +0.1
906,284 - -1.9
906,297 + -0.4
906,425 + CSW01_18920 0.66 +0.1
906,481 + +1.5
906,686 + -1.0
906,736 - +0.5
906,916 + CSW01_18925 0.18 +1.4
906,916 + CSW01_18925 0.18 +0.3
907,103 + CSW01_18925 0.32 +0.1
907,103 + CSW01_18925 0.32 +0.3
907,123 - CSW01_18925 0.33 +0.1
907,200 + CSW01_18925 0.39 -0.1
907,442 + CSW01_18925 0.56 +0.6
907,442 + CSW01_18925 0.56 +1.0
907,497 + CSW01_18925 0.60 -0.5
907,505 - CSW01_18925 0.61 -1.6
907,524 - CSW01_18925 0.62 -0.0
907,575 - CSW01_18925 0.66 +2.2
907,646 + CSW01_18925 0.71 +0.5
907,754 + CSW01_18925 0.79 -0.5
907,806 - CSW01_18925 0.83 +1.6
907,846 + CSW01_18925 0.86 +0.7
907,918 + +0.3
907,986 + -0.1
908,015 + +0.6
908,045 - +0.4
908,093 - -0.5
908,205 + +0.6
908,237 + -0.5
908,245 - +0.6
908,252 - -0.5
908,269 + -0.1
908,295 - +0.7
908,610 + CSW01_18930 0.37 -0.7
908,618 - CSW01_18930 0.38 +0.4
908,620 + CSW01_18930 0.39 -0.1
908,620 + CSW01_18930 0.39 +0.1
908,630 + CSW01_18930 0.40 +0.6
908,703 - CSW01_18930 0.52 -0.2
908,729 + CSW01_18930 0.57 +0.3
908,737 - CSW01_18930 0.58 -0.5
908,737 - CSW01_18930 0.58 -0.3
908,758 - CSW01_18930 0.61 -1.2
908,802 + CSW01_18930 0.69 +0.3
908,810 - CSW01_18930 0.70 -0.0
908,810 - CSW01_18930 0.70 -0.5
908,906 + CSW01_18930 0.86 -0.2
908,924 - CSW01_18930 0.89 -0.1

Or see this region's nucleotide sequence