Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18120

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18110 and CSW01_18115 are separated by 56 nucleotidesCSW01_18115 and CSW01_18120 are separated by 235 nucleotidesCSW01_18120 and CSW01_18125 are separated by 173 nucleotides CSW01_18110: CSW01_18110 - hypothetical protein, at 730,795 to 730,899 _18110 CSW01_18115: CSW01_18115 - molecular chaperone DnaJ, at 730,956 to 731,585 _18115 CSW01_18120: CSW01_18120 - DUF2238 domain-containing protein, at 731,821 to 732,408 _18120 CSW01_18125: CSW01_18125 - integrase, at 732,582 to 733,961 _18125 Position (kb) 731 732 733Strain fitness (log2 ratio) -1 0 1 2at 731.115 kb on + strand, within CSW01_18115at 731.141 kb on - strand, within CSW01_18115at 731.237 kb on + strand, within CSW01_18115at 731.250 kb on - strand, within CSW01_18115at 731.260 kb on + strand, within CSW01_18115at 731.324 kb on - strand, within CSW01_18115at 731.357 kb on - strand, within CSW01_18115at 731.357 kb on - strand, within CSW01_18115at 731.369 kb on + strand, within CSW01_18115at 731.386 kb on - strand, within CSW01_18115at 731.454 kb on + strand, within CSW01_18115at 731.745 kb on + strandat 731.796 kb on - strandat 731.826 kb on - strandat 731.983 kb on - strand, within CSW01_18120at 732.006 kb on - strand, within CSW01_18120at 732.103 kb on + strand, within CSW01_18120at 732.107 kb on - strand, within CSW01_18120at 732.196 kb on + strand, within CSW01_18120at 732.196 kb on + strand, within CSW01_18120at 732.204 kb on - strand, within CSW01_18120at 732.258 kb on + strand, within CSW01_18120at 732.345 kb on - strand, within CSW01_18120at 732.403 kb on + strandat 732.420 kb on + strandat 732.722 kb on + strand, within CSW01_18125at 732.853 kb on + strand, within CSW01_18125at 732.853 kb on + strand, within CSW01_18125at 732.896 kb on + strand, within CSW01_18125at 732.896 kb on + strand, within CSW01_18125at 732.917 kb on + strand, within CSW01_18125at 732.917 kb on + strand, within CSW01_18125at 732.924 kb on + strand, within CSW01_18125at 733.001 kb on + strand, within CSW01_18125at 733.009 kb on - strand, within CSW01_18125at 733.203 kb on + strand, within CSW01_18125at 733.203 kb on + strand, within CSW01_18125at 733.211 kb on - strand, within CSW01_18125at 733.238 kb on - strand, within CSW01_18125at 733.254 kb on - strand, within CSW01_18125at 733.286 kb on + strand, within CSW01_18125at 733.291 kb on - strand, within CSW01_18125at 733.317 kb on - strand, within CSW01_18125at 733.361 kb on + strand, within CSW01_18125at 733.363 kb on - strand, within CSW01_18125at 733.369 kb on + strand, within CSW01_18125

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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731,115 + CSW01_18115 0.25 -0.4
731,141 - CSW01_18115 0.29 -0.0
731,237 + CSW01_18115 0.45 +0.2
731,250 - CSW01_18115 0.47 +0.1
731,260 + CSW01_18115 0.48 +0.0
731,324 - CSW01_18115 0.58 +1.0
731,357 - CSW01_18115 0.64 +1.1
731,357 - CSW01_18115 0.64 -0.1
731,369 + CSW01_18115 0.66 +0.4
731,386 - CSW01_18115 0.68 -0.3
731,454 + CSW01_18115 0.79 -0.8
731,745 + +0.3
731,796 - +0.2
731,826 - +2.0
731,983 - CSW01_18120 0.28 +2.1
732,006 - CSW01_18120 0.31 +0.9
732,103 + CSW01_18120 0.48 -0.4
732,107 - CSW01_18120 0.49 +0.0
732,196 + CSW01_18120 0.64 +1.1
732,196 + CSW01_18120 0.64 -0.6
732,204 - CSW01_18120 0.65 +0.6
732,258 + CSW01_18120 0.74 +0.3
732,345 - CSW01_18120 0.89 +0.9
732,403 + +0.3
732,420 + +0.5
732,722 + CSW01_18125 0.10 -0.9
732,853 + CSW01_18125 0.20 +0.4
732,853 + CSW01_18125 0.20 +0.4
732,896 + CSW01_18125 0.23 +0.3
732,896 + CSW01_18125 0.23 -0.3
732,917 + CSW01_18125 0.24 +0.8
732,917 + CSW01_18125 0.24 -0.1
732,924 + CSW01_18125 0.25 -0.2
733,001 + CSW01_18125 0.30 +0.3
733,009 - CSW01_18125 0.31 +0.1
733,203 + CSW01_18125 0.45 -0.4
733,203 + CSW01_18125 0.45 +0.1
733,211 - CSW01_18125 0.46 +0.3
733,238 - CSW01_18125 0.48 +0.3
733,254 - CSW01_18125 0.49 +0.1
733,286 + CSW01_18125 0.51 +0.8
733,291 - CSW01_18125 0.51 +0.6
733,317 - CSW01_18125 0.53 +0.1
733,361 + CSW01_18125 0.56 -0.5
733,363 - CSW01_18125 0.57 -0.3
733,369 + CSW01_18125 0.57 +0.2

Or see this region's nucleotide sequence