Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17470

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17460 and CSW01_17465 overlap by 4 nucleotidesCSW01_17465 and CSW01_17470 are separated by 271 nucleotidesCSW01_17470 and CSW01_17475 are separated by 165 nucleotides CSW01_17460: CSW01_17460 - D-alanine--D-alanine ligase, at 582,643 to 583,779 _17460 CSW01_17465: CSW01_17465 - DedA family protein, at 583,776 to 584,357 _17465 CSW01_17470: CSW01_17470 - DUF3069 domain-containing protein, at 584,629 to 585,066 _17470 CSW01_17475: CSW01_17475 - PTS maltose transporter subunit IIBC, at 585,232 to 586,671 _17475 Position (kb) 584 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 583.783 kb on - strandat 583.850 kb on + strand, within CSW01_17465at 583.905 kb on - strand, within CSW01_17465at 583.965 kb on - strand, within CSW01_17465at 583.965 kb on - strand, within CSW01_17465at 584.064 kb on - strand, within CSW01_17465at 584.149 kb on + strand, within CSW01_17465at 584.203 kb on + strand, within CSW01_17465at 584.215 kb on + strand, within CSW01_17465at 584.253 kb on - strand, within CSW01_17465at 584.327 kb on - strandat 584.330 kb on - strandat 584.394 kb on - strandat 584.533 kb on + strandat 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.790 kb on - strand, within CSW01_17470at 584.843 kb on - strand, within CSW01_17470at 584.880 kb on - strand, within CSW01_17470at 584.880 kb on - strand, within CSW01_17470at 584.899 kb on + strand, within CSW01_17470at 584.938 kb on + strand, within CSW01_17470at 584.948 kb on - strand, within CSW01_17470at 584.956 kb on - strand, within CSW01_17470at 584.968 kb on + strand, within CSW01_17470at 584.971 kb on + strand, within CSW01_17470at 584.971 kb on + strand, within CSW01_17470at 585.079 kb on - strandat 585.169 kb on + strandat 585.193 kb on + strandat 585.193 kb on + strandat 585.244 kb on - strandat 585.249 kb on - strandat 585.291 kb on + strandat 585.358 kb on - strandat 585.393 kb on - strand, within CSW01_17475at 585.417 kb on - strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.438 kb on - strand, within CSW01_17475at 585.438 kb on - strand, within CSW01_17475at 585.443 kb on + strand, within CSW01_17475at 585.567 kb on - strand, within CSW01_17475at 585.578 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.687 kb on + strand, within CSW01_17475at 585.692 kb on + strand, within CSW01_17475at 585.694 kb on + strand, within CSW01_17475at 585.762 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.870 kb on + strand, within CSW01_17475at 585.870 kb on + strand, within CSW01_17475at 585.878 kb on - strand, within CSW01_17475at 585.878 kb on - strand, within CSW01_17475at 585.902 kb on - strand, within CSW01_17475at 585.903 kb on + strand, within CSW01_17475at 585.911 kb on - strand, within CSW01_17475at 585.969 kb on - strand, within CSW01_17475

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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583,783 - -0.5
583,850 + CSW01_17465 0.13 -0.1
583,905 - CSW01_17465 0.22 -0.9
583,965 - CSW01_17465 0.32 +0.4
583,965 - CSW01_17465 0.32 -0.1
584,064 - CSW01_17465 0.49 +0.3
584,149 + CSW01_17465 0.64 -0.5
584,203 + CSW01_17465 0.73 +1.7
584,215 + CSW01_17465 0.75 +0.1
584,253 - CSW01_17465 0.82 +1.6
584,327 - -0.6
584,330 - +0.6
584,394 - -0.8
584,533 + +1.4
584,681 + CSW01_17470 0.12 -0.3
584,681 + CSW01_17470 0.12 +1.5
584,681 + CSW01_17470 0.12 -0.5
584,681 + CSW01_17470 0.12 -0.0
584,681 + CSW01_17470 0.12 -1.3
584,681 + CSW01_17470 0.12 -0.0
584,681 + CSW01_17470 0.12 -0.6
584,681 + CSW01_17470 0.12 +0.2
584,681 + CSW01_17470 0.12 -0.9
584,681 + CSW01_17470 0.12 -0.5
584,681 + CSW01_17470 0.12 -0.1
584,689 - CSW01_17470 0.14 -0.3
584,689 - CSW01_17470 0.14 +0.2
584,689 - CSW01_17470 0.14 -0.3
584,689 - CSW01_17470 0.14 -1.0
584,689 - CSW01_17470 0.14 -0.2
584,689 - CSW01_17470 0.14 -1.1
584,689 - CSW01_17470 0.14 -0.1
584,790 - CSW01_17470 0.37 -1.7
584,843 - CSW01_17470 0.49 -0.9
584,880 - CSW01_17470 0.57 +0.8
584,880 - CSW01_17470 0.57 +0.5
584,899 + CSW01_17470 0.62 -1.3
584,938 + CSW01_17470 0.71 -1.6
584,948 - CSW01_17470 0.73 -2.8
584,956 - CSW01_17470 0.75 -0.3
584,968 + CSW01_17470 0.77 +0.0
584,971 + CSW01_17470 0.78 +0.1
584,971 + CSW01_17470 0.78 +0.8
585,079 - -0.0
585,169 + -0.6
585,193 + -0.4
585,193 + +0.9
585,244 - -0.2
585,249 - -0.2
585,291 + +1.6
585,358 - +0.6
585,393 - CSW01_17475 0.11 +0.3
585,417 - CSW01_17475 0.13 +0.3
585,430 + CSW01_17475 0.14 +0.5
585,430 + CSW01_17475 0.14 +0.8
585,430 + CSW01_17475 0.14 +0.8
585,438 - CSW01_17475 0.14 -0.1
585,438 - CSW01_17475 0.14 -1.9
585,443 + CSW01_17475 0.15 -0.8
585,567 - CSW01_17475 0.23 +2.4
585,578 + CSW01_17475 0.24 +0.1
585,608 + CSW01_17475 0.26 +1.1
585,608 + CSW01_17475 0.26 -0.1
585,608 + CSW01_17475 0.26 +0.4
585,608 + CSW01_17475 0.26 -0.2
585,608 + CSW01_17475 0.26 -1.1
585,608 + CSW01_17475 0.26 -0.6
585,616 - CSW01_17475 0.27 -1.1
585,616 - CSW01_17475 0.27 +0.1
585,616 - CSW01_17475 0.27 +0.1
585,616 - CSW01_17475 0.27 -0.0
585,616 - CSW01_17475 0.27 -0.9
585,687 + CSW01_17475 0.32 -1.7
585,692 + CSW01_17475 0.32 -0.2
585,694 + CSW01_17475 0.32 +1.8
585,762 - CSW01_17475 0.37 +1.0
585,789 - CSW01_17475 0.39 -0.9
585,789 - CSW01_17475 0.39 +0.1
585,789 - CSW01_17475 0.39 +0.7
585,870 + CSW01_17475 0.44 +1.0
585,870 + CSW01_17475 0.44 -1.7
585,878 - CSW01_17475 0.45 -0.1
585,878 - CSW01_17475 0.45 +0.7
585,902 - CSW01_17475 0.47 +0.1
585,903 + CSW01_17475 0.47 +0.1
585,911 - CSW01_17475 0.47 +0.0
585,969 - CSW01_17475 0.51 +0.2

Or see this region's nucleotide sequence