Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17440

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17430 and CSW01_17435 are separated by 92 nucleotidesCSW01_17435 and CSW01_17440 are separated by 115 nucleotidesCSW01_17440 and CSW01_17445 overlap by 4 nucleotidesCSW01_17445 and CSW01_17450 are separated by 10 nucleotides CSW01_17430: CSW01_17430 - NADH oxidase, at 576,775 to 578,478 _17430 CSW01_17435: CSW01_17435 - VOC family protein, at 578,571 to 578,951 _17435 CSW01_17440: CSW01_17440 - hemolysin, at 579,067 to 580,812 _17440 CSW01_17445: CSW01_17445 - YHS domain-containing protein, at 580,809 to 581,255 _17445 CSW01_17450: CSW01_17450 - hypothetical protein, at 581,266 to 582,012 _17450 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 578.086 kb on - strand, within CSW01_17430at 578.096 kb on + strand, within CSW01_17430at 578.096 kb on + strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.104 kb on - strand, within CSW01_17430at 578.114 kb on - strand, within CSW01_17430at 578.119 kb on + strand, within CSW01_17430at 578.127 kb on - strand, within CSW01_17430at 578.156 kb on + strand, within CSW01_17430at 578.256 kb on - strand, within CSW01_17430at 578.328 kb on - strandat 578.328 kb on - strandat 578.420 kb on + strandat 578.447 kb on - strandat 578.447 kb on - strandat 578.472 kb on + strandat 578.472 kb on + strandat 578.472 kb on + strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.480 kb on - strandat 578.522 kb on - strandat 578.534 kb on - strandat 578.602 kb on + strandat 578.730 kb on - strand, within CSW01_17435at 578.747 kb on - strand, within CSW01_17435at 578.772 kb on - strand, within CSW01_17435at 579.012 kb on + strandat 579.055 kb on + strandat 579.091 kb on - strandat 579.109 kb on + strandat 579.174 kb on - strandat 579.259 kb on + strand, within CSW01_17440at 579.262 kb on - strand, within CSW01_17440at 579.287 kb on - strand, within CSW01_17440at 579.312 kb on - strand, within CSW01_17440at 579.362 kb on + strand, within CSW01_17440at 579.381 kb on - strand, within CSW01_17440at 579.381 kb on - strand, within CSW01_17440at 579.417 kb on - strand, within CSW01_17440at 579.469 kb on - strand, within CSW01_17440at 579.494 kb on + strand, within CSW01_17440at 579.562 kb on - strand, within CSW01_17440at 579.564 kb on + strand, within CSW01_17440at 579.573 kb on + strand, within CSW01_17440at 579.688 kb on + strand, within CSW01_17440at 579.734 kb on - strand, within CSW01_17440at 579.796 kb on + strand, within CSW01_17440at 579.951 kb on - strand, within CSW01_17440at 579.961 kb on - strand, within CSW01_17440at 580.070 kb on + strand, within CSW01_17440at 580.080 kb on + strand, within CSW01_17440at 580.161 kb on + strand, within CSW01_17440at 580.161 kb on + strand, within CSW01_17440at 580.328 kb on + strand, within CSW01_17440at 580.411 kb on + strand, within CSW01_17440at 580.430 kb on + strand, within CSW01_17440at 580.438 kb on - strand, within CSW01_17440at 580.438 kb on - strand, within CSW01_17440at 580.438 kb on - strand, within CSW01_17440at 580.448 kb on + strand, within CSW01_17440at 580.453 kb on + strand, within CSW01_17440at 580.478 kb on + strand, within CSW01_17440at 580.478 kb on + strand, within CSW01_17440at 580.587 kb on + strand, within CSW01_17440at 580.595 kb on - strand, within CSW01_17440at 580.606 kb on + strand, within CSW01_17440at 580.619 kb on - strand, within CSW01_17440at 580.619 kb on - strand, within CSW01_17440at 580.653 kb on + strandat 580.653 kb on + strandat 580.653 kb on + strandat 580.653 kb on + strandat 580.661 kb on - strandat 580.661 kb on - strandat 580.674 kb on + strandat 580.712 kb on - strandat 580.743 kb on + strandat 580.809 kb on - strandat 580.842 kb on - strandat 580.918 kb on + strand, within CSW01_17445at 580.985 kb on + strand, within CSW01_17445at 581.061 kb on + strand, within CSW01_17445at 581.088 kb on - strand, within CSW01_17445at 581.100 kb on - strand, within CSW01_17445at 581.100 kb on - strand, within CSW01_17445at 581.100 kb on - strand, within CSW01_17445at 581.119 kb on + strand, within CSW01_17445at 581.160 kb on - strand, within CSW01_17445at 581.239 kb on - strandat 581.329 kb on + strandat 581.370 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.391 kb on + strand, within CSW01_17450at 581.399 kb on - strand, within CSW01_17450at 581.455 kb on - strand, within CSW01_17450at 581.512 kb on - strand, within CSW01_17450at 581.524 kb on - strand, within CSW01_17450at 581.524 kb on - strand, within CSW01_17450at 581.526 kb on + strand, within CSW01_17450at 581.536 kb on + strand, within CSW01_17450at 581.584 kb on + strand, within CSW01_17450at 581.584 kb on + strand, within CSW01_17450at 581.584 kb on + strand, within CSW01_17450at 581.592 kb on - strand, within CSW01_17450at 581.621 kb on - strand, within CSW01_17450at 581.631 kb on - strand, within CSW01_17450at 581.648 kb on - strand, within CSW01_17450

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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578,086 - CSW01_17430 0.77 +0.1
578,096 + CSW01_17430 0.78 -1.0
578,096 + CSW01_17430 0.78 +1.8
578,104 - CSW01_17430 0.78 -0.3
578,104 - CSW01_17430 0.78 +0.6
578,104 - CSW01_17430 0.78 -0.7
578,104 - CSW01_17430 0.78 -0.1
578,104 - CSW01_17430 0.78 +0.2
578,104 - CSW01_17430 0.78 +0.1
578,104 - CSW01_17430 0.78 +1.1
578,114 - CSW01_17430 0.79 -0.0
578,119 + CSW01_17430 0.79 -0.1
578,127 - CSW01_17430 0.79 -0.7
578,156 + CSW01_17430 0.81 +0.2
578,256 - CSW01_17430 0.87 +0.6
578,328 - +0.4
578,328 - +0.1
578,420 + -0.2
578,447 - -0.3
578,447 - +0.2
578,472 + -0.3
578,472 + +0.0
578,472 + +0.4
578,480 - +0.1
578,480 - -0.1
578,480 - +0.7
578,480 - -0.4
578,522 - +0.2
578,534 - +1.2
578,602 + -0.2
578,730 - CSW01_17435 0.42 +1.7
578,747 - CSW01_17435 0.46 -0.2
578,772 - CSW01_17435 0.53 -1.3
579,012 + -0.4
579,055 + +0.5
579,091 - +0.0
579,109 + -0.2
579,174 - +0.3
579,259 + CSW01_17440 0.11 -0.6
579,262 - CSW01_17440 0.11 +0.1
579,287 - CSW01_17440 0.13 +0.8
579,312 - CSW01_17440 0.14 -1.5
579,362 + CSW01_17440 0.17 +2.1
579,381 - CSW01_17440 0.18 +2.1
579,381 - CSW01_17440 0.18 +0.7
579,417 - CSW01_17440 0.20 -0.9
579,469 - CSW01_17440 0.23 -0.5
579,494 + CSW01_17440 0.24 +0.3
579,562 - CSW01_17440 0.28 +0.0
579,564 + CSW01_17440 0.28 -0.2
579,573 + CSW01_17440 0.29 -0.2
579,688 + CSW01_17440 0.36 -2.2
579,734 - CSW01_17440 0.38 -0.3
579,796 + CSW01_17440 0.42 +2.1
579,951 - CSW01_17440 0.51 +0.1
579,961 - CSW01_17440 0.51 -0.0
580,070 + CSW01_17440 0.57 +0.8
580,080 + CSW01_17440 0.58 +0.5
580,161 + CSW01_17440 0.63 +0.1
580,161 + CSW01_17440 0.63 +0.0
580,328 + CSW01_17440 0.72 -0.5
580,411 + CSW01_17440 0.77 -1.5
580,430 + CSW01_17440 0.78 +0.4
580,438 - CSW01_17440 0.79 +0.6
580,438 - CSW01_17440 0.79 -0.7
580,438 - CSW01_17440 0.79 -0.1
580,448 + CSW01_17440 0.79 +1.1
580,453 + CSW01_17440 0.79 +0.6
580,478 + CSW01_17440 0.81 -0.8
580,478 + CSW01_17440 0.81 +0.5
580,587 + CSW01_17440 0.87 +0.9
580,595 - CSW01_17440 0.88 +0.6
580,606 + CSW01_17440 0.88 -0.6
580,619 - CSW01_17440 0.89 -0.4
580,619 - CSW01_17440 0.89 +1.6
580,653 + -0.1
580,653 + +0.1
580,653 + +0.5
580,653 + +0.1
580,661 - -0.6
580,661 - -0.4
580,674 + +0.4
580,712 - -0.1
580,743 + -0.2
580,809 - +0.4
580,842 - -0.6
580,918 + CSW01_17445 0.24 -0.3
580,985 + CSW01_17445 0.39 +0.3
581,061 + CSW01_17445 0.56 +0.0
581,088 - CSW01_17445 0.62 -2.3
581,100 - CSW01_17445 0.65 -0.9
581,100 - CSW01_17445 0.65 -0.3
581,100 - CSW01_17445 0.65 +2.1
581,119 + CSW01_17445 0.69 -0.3
581,160 - CSW01_17445 0.79 +0.5
581,239 - +0.6
581,329 + -0.9
581,370 + CSW01_17450 0.14 +0.3
581,381 + CSW01_17450 0.15 +0.8
581,381 + CSW01_17450 0.15 +0.6
581,381 + CSW01_17450 0.15 -2.0
581,381 + CSW01_17450 0.15 +0.7
581,391 + CSW01_17450 0.17 +0.1
581,399 - CSW01_17450 0.18 -0.6
581,455 - CSW01_17450 0.25 -0.9
581,512 - CSW01_17450 0.33 +0.7
581,524 - CSW01_17450 0.35 +0.1
581,524 - CSW01_17450 0.35 +0.8
581,526 + CSW01_17450 0.35 -0.3
581,536 + CSW01_17450 0.36 +0.6
581,584 + CSW01_17450 0.43 +0.5
581,584 + CSW01_17450 0.43 +0.8
581,584 + CSW01_17450 0.43 -0.2
581,592 - CSW01_17450 0.44 -0.0
581,621 - CSW01_17450 0.48 +0.4
581,631 - CSW01_17450 0.49 +1.0
581,648 - CSW01_17450 0.51 -0.1

Or see this region's nucleotide sequence