Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17310

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17300 and CSW01_17305 are separated by 183 nucleotidesCSW01_17305 and CSW01_17310 are separated by 21 nucleotidesCSW01_17310 and CSW01_17315 are separated by 84 nucleotides CSW01_17300: CSW01_17300 - molybdopterin-synthase adenylyltransferase MoeB, at 551,456 to 552,220 _17300 CSW01_17305: CSW01_17305 - glyoxalase, at 552,404 to 552,772 _17305 CSW01_17310: CSW01_17310 - 3-mercaptopyruvate sulfurtransferase, at 552,794 to 553,624 _17310 CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704 _17315 Position (kb) 552 553 554Strain fitness (log2 ratio) -2 -1 0 1 2 3at 551.794 kb on - strand, within CSW01_17300at 551.834 kb on + strand, within CSW01_17300at 551.862 kb on + strand, within CSW01_17300at 551.870 kb on - strand, within CSW01_17300at 551.872 kb on + strand, within CSW01_17300at 551.955 kb on + strand, within CSW01_17300at 551.974 kb on + strand, within CSW01_17300at 551.974 kb on + strand, within CSW01_17300at 552.009 kb on - strand, within CSW01_17300at 552.019 kb on + strand, within CSW01_17300at 552.024 kb on + strand, within CSW01_17300at 552.027 kb on - strand, within CSW01_17300at 552.032 kb on - strand, within CSW01_17300at 552.043 kb on - strand, within CSW01_17300at 552.070 kb on + strand, within CSW01_17300at 552.079 kb on - strand, within CSW01_17300at 552.087 kb on + strand, within CSW01_17300at 552.114 kb on + strand, within CSW01_17300at 552.122 kb on - strand, within CSW01_17300at 552.122 kb on - strand, within CSW01_17300at 552.310 kb on - strandat 552.355 kb on + strandat 552.361 kb on + strandat 552.409 kb on - strandat 552.489 kb on + strand, within CSW01_17305at 552.538 kb on - strand, within CSW01_17305at 552.561 kb on + strand, within CSW01_17305at 552.586 kb on - strand, within CSW01_17305at 552.586 kb on - strand, within CSW01_17305at 552.589 kb on + strand, within CSW01_17305at 552.637 kb on + strand, within CSW01_17305at 552.637 kb on + strand, within CSW01_17305at 552.645 kb on - strand, within CSW01_17305at 552.683 kb on + strand, within CSW01_17305at 552.697 kb on + strand, within CSW01_17305at 552.705 kb on - strand, within CSW01_17305at 552.705 kb on - strand, within CSW01_17305at 552.705 kb on - strand, within CSW01_17305at 552.993 kb on + strand, within CSW01_17310at 552.993 kb on + strand, within CSW01_17310at 553.001 kb on - strand, within CSW01_17310at 553.001 kb on - strand, within CSW01_17310at 553.006 kb on + strand, within CSW01_17310at 553.014 kb on - strand, within CSW01_17310at 553.138 kb on - strand, within CSW01_17310at 553.189 kb on + strand, within CSW01_17310at 553.252 kb on - strand, within CSW01_17310at 553.307 kb on - strand, within CSW01_17310at 553.367 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.405 kb on + strand, within CSW01_17310at 553.458 kb on + strand, within CSW01_17310at 553.458 kb on + strand, within CSW01_17310at 553.466 kb on - strand, within CSW01_17310at 553.468 kb on + strand, within CSW01_17310at 553.473 kb on + strand, within CSW01_17310at 553.476 kb on - strand, within CSW01_17310at 553.503 kb on + strand, within CSW01_17310at 553.503 kb on + strand, within CSW01_17310at 553.511 kb on - strand, within CSW01_17310at 553.518 kb on + strand, within CSW01_17310at 553.521 kb on + strand, within CSW01_17310at 553.521 kb on + strand, within CSW01_17310at 553.521 kb on + strand, within CSW01_17310at 553.529 kb on - strand, within CSW01_17310at 553.538 kb on + strand, within CSW01_17310at 553.548 kb on - strandat 553.589 kb on + strandat 553.598 kb on - strandat 553.749 kb on - strandat 553.822 kb on - strand, within CSW01_17315at 553.838 kb on + strand, within CSW01_17315at 554.106 kb on - strand, within CSW01_17315at 554.108 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.232 kb on + strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.240 kb on - strand, within CSW01_17315at 554.300 kb on + strand, within CSW01_17315at 554.340 kb on - strand, within CSW01_17315at 554.352 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.481 kb on + strand, within CSW01_17315at 554.489 kb on - strand, within CSW01_17315at 554.612 kb on + strandat 554.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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551,794 - CSW01_17300 0.44 -0.8
551,834 + CSW01_17300 0.49 +0.5
551,862 + CSW01_17300 0.53 +0.4
551,870 - CSW01_17300 0.54 -0.1
551,872 + CSW01_17300 0.54 +0.8
551,955 + CSW01_17300 0.65 -0.1
551,974 + CSW01_17300 0.68 -0.0
551,974 + CSW01_17300 0.68 -0.0
552,009 - CSW01_17300 0.72 -0.7
552,019 + CSW01_17300 0.74 +0.3
552,024 + CSW01_17300 0.74 +1.5
552,027 - CSW01_17300 0.75 -0.0
552,032 - CSW01_17300 0.75 -0.8
552,043 - CSW01_17300 0.77 -0.1
552,070 + CSW01_17300 0.80 +0.2
552,079 - CSW01_17300 0.81 +0.4
552,087 + CSW01_17300 0.82 +0.1
552,114 + CSW01_17300 0.86 -0.3
552,122 - CSW01_17300 0.87 +0.4
552,122 - CSW01_17300 0.87 -0.1
552,310 - -0.0
552,355 + +0.1
552,361 + -0.2
552,409 - +0.1
552,489 + CSW01_17305 0.23 +0.9
552,538 - CSW01_17305 0.36 -0.4
552,561 + CSW01_17305 0.43 +0.3
552,586 - CSW01_17305 0.49 -0.3
552,586 - CSW01_17305 0.49 -0.0
552,589 + CSW01_17305 0.50 -0.2
552,637 + CSW01_17305 0.63 -1.1
552,637 + CSW01_17305 0.63 -0.1
552,645 - CSW01_17305 0.65 +0.5
552,683 + CSW01_17305 0.76 +2.9
552,697 + CSW01_17305 0.79 +0.5
552,705 - CSW01_17305 0.82 -0.3
552,705 - CSW01_17305 0.82 +0.0
552,705 - CSW01_17305 0.82 -0.3
552,993 + CSW01_17310 0.24 -0.3
552,993 + CSW01_17310 0.24 -0.2
553,001 - CSW01_17310 0.25 -0.2
553,001 - CSW01_17310 0.25 +0.2
553,006 + CSW01_17310 0.26 -0.6
553,014 - CSW01_17310 0.26 -0.7
553,138 - CSW01_17310 0.41 +2.7
553,189 + CSW01_17310 0.48 -0.2
553,252 - CSW01_17310 0.55 -0.4
553,307 - CSW01_17310 0.62 +0.3
553,367 + CSW01_17310 0.69 -1.1
553,405 + CSW01_17310 0.74 +0.2
553,405 + CSW01_17310 0.74 -0.1
553,405 + CSW01_17310 0.74 +0.9
553,405 + CSW01_17310 0.74 -0.0
553,458 + CSW01_17310 0.80 -0.2
553,458 + CSW01_17310 0.80 -0.9
553,466 - CSW01_17310 0.81 +0.5
553,468 + CSW01_17310 0.81 +0.9
553,473 + CSW01_17310 0.82 +0.9
553,476 - CSW01_17310 0.82 +0.1
553,503 + CSW01_17310 0.85 +0.0
553,503 + CSW01_17310 0.85 -0.6
553,511 - CSW01_17310 0.86 +0.1
553,518 + CSW01_17310 0.87 -0.9
553,521 + CSW01_17310 0.87 -0.5
553,521 + CSW01_17310 0.87 +0.7
553,521 + CSW01_17310 0.87 -0.9
553,529 - CSW01_17310 0.88 +0.5
553,538 + CSW01_17310 0.90 +1.1
553,548 - +0.9
553,589 + -0.3
553,598 - -0.9
553,749 - -0.2
553,822 - CSW01_17315 0.11 +0.1
553,838 + CSW01_17315 0.13 -0.0
554,106 - CSW01_17315 0.40 -0.6
554,108 + CSW01_17315 0.40 +1.0
554,232 + CSW01_17315 0.53 +0.0
554,232 + CSW01_17315 0.53 +0.6
554,232 + CSW01_17315 0.53 -0.1
554,232 + CSW01_17315 0.53 +2.1
554,232 + CSW01_17315 0.53 -0.4
554,232 + CSW01_17315 0.53 -0.1
554,232 + CSW01_17315 0.53 -0.2
554,232 + CSW01_17315 0.53 +0.0
554,232 + CSW01_17315 0.53 +0.5
554,240 - CSW01_17315 0.53 +0.2
554,240 - CSW01_17315 0.53 -0.2
554,240 - CSW01_17315 0.53 -2.5
554,240 - CSW01_17315 0.53 -0.1
554,240 - CSW01_17315 0.53 +0.1
554,240 - CSW01_17315 0.53 -1.1
554,240 - CSW01_17315 0.53 +0.3
554,240 - CSW01_17315 0.53 +2.4
554,300 + CSW01_17315 0.59 -0.4
554,340 - CSW01_17315 0.63 +0.5
554,352 - CSW01_17315 0.65 +1.7
554,420 - CSW01_17315 0.71 -0.8
554,420 - CSW01_17315 0.71 -1.0
554,481 + CSW01_17315 0.78 -0.5
554,489 - CSW01_17315 0.78 +0.9
554,612 + +0.6
554,620 + +0.3

Or see this region's nucleotide sequence