Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16950

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16940 and CSW01_16945 are separated by 161 nucleotidesCSW01_16945 and CSW01_16950 are separated by 231 nucleotidesCSW01_16950 and CSW01_16955 are separated by 229 nucleotides CSW01_16940: CSW01_16940 - LysR family transcriptional regulator, at 476,454 to 477,359 _16940 CSW01_16945: CSW01_16945 - DUF1097 domain-containing protein, at 477,521 to 478,033 _16945 CSW01_16950: CSW01_16950 - ATP-dependent endonuclease, at 478,265 to 479,929 _16950 CSW01_16955: CSW01_16955 - bifunctional metallophosphatase/5'-nucleotidase, at 480,159 to 481,901 _16955 Position (kb) 478 479 480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 477.533 kb on + strandat 477.541 kb on - strandat 477.547 kb on + strandat 477.606 kb on + strand, within CSW01_16945at 477.616 kb on + strand, within CSW01_16945at 477.651 kb on + strand, within CSW01_16945at 477.669 kb on - strand, within CSW01_16945at 477.686 kb on + strand, within CSW01_16945at 477.686 kb on + strand, within CSW01_16945at 477.686 kb on + strand, within CSW01_16945at 477.694 kb on - strand, within CSW01_16945at 477.951 kb on - strand, within CSW01_16945at 477.985 kb on + strandat 477.995 kb on + strandat 478.034 kb on + strandat 478.042 kb on - strandat 478.081 kb on - strandat 478.287 kb on + strandat 478.318 kb on - strandat 478.321 kb on + strandat 478.323 kb on + strandat 478.329 kb on - strandat 478.331 kb on - strandat 478.471 kb on + strand, within CSW01_16950at 478.471 kb on + strand, within CSW01_16950at 478.471 kb on + strand, within CSW01_16950at 478.471 kb on + strand, within CSW01_16950at 478.471 kb on + strand, within CSW01_16950at 478.471 kb on + strand, within CSW01_16950at 478.471 kb on + strand, within CSW01_16950at 478.479 kb on - strand, within CSW01_16950at 478.479 kb on - strand, within CSW01_16950at 478.479 kb on - strand, within CSW01_16950at 478.663 kb on - strand, within CSW01_16950at 478.802 kb on + strand, within CSW01_16950at 478.843 kb on + strand, within CSW01_16950at 478.973 kb on + strand, within CSW01_16950at 479.628 kb on + strand, within CSW01_16950at 479.628 kb on + strand, within CSW01_16950at 479.628 kb on + strand, within CSW01_16950at 479.636 kb on - strand, within CSW01_16950at 479.636 kb on - strand, within CSW01_16950at 479.636 kb on - strand, within CSW01_16950at 479.728 kb on + strand, within CSW01_16950at 479.745 kb on - strand, within CSW01_16950at 479.838 kb on - strandat 479.838 kb on - strandat 479.920 kb on - strandat 479.931 kb on - strandat 479.998 kb on - strandat 480.121 kb on - strandat 480.130 kb on + strandat 480.139 kb on - strandat 480.186 kb on + strandat 480.194 kb on - strandat 480.196 kb on + strandat 480.282 kb on + strandat 480.300 kb on - strandat 480.340 kb on + strand, within CSW01_16955at 480.389 kb on - strand, within CSW01_16955at 480.419 kb on + strand, within CSW01_16955at 480.419 kb on + strand, within CSW01_16955at 480.427 kb on - strand, within CSW01_16955at 480.427 kb on - strand, within CSW01_16955at 480.453 kb on - strand, within CSW01_16955at 480.610 kb on + strand, within CSW01_16955at 480.618 kb on - strand, within CSW01_16955at 480.618 kb on - strand, within CSW01_16955at 480.625 kb on + strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.644 kb on - strand, within CSW01_16955at 480.739 kb on + strand, within CSW01_16955at 480.747 kb on - strand, within CSW01_16955at 480.747 kb on - strand, within CSW01_16955at 480.747 kb on - strand, within CSW01_16955at 480.845 kb on - strand, within CSW01_16955at 480.859 kb on - strand, within CSW01_16955at 480.887 kb on + strand, within CSW01_16955at 480.897 kb on + strand, within CSW01_16955at 480.897 kb on + strand, within CSW01_16955at 480.905 kb on - strand, within CSW01_16955at 480.905 kb on - strand, within CSW01_16955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
remove
477,533 + -0.0
477,541 - +0.7
477,547 + -0.8
477,606 + CSW01_16945 0.17 +1.6
477,616 + CSW01_16945 0.19 -0.9
477,651 + CSW01_16945 0.25 -0.6
477,669 - CSW01_16945 0.29 -0.2
477,686 + CSW01_16945 0.32 -0.6
477,686 + CSW01_16945 0.32 +0.3
477,686 + CSW01_16945 0.32 -3.4
477,694 - CSW01_16945 0.34 -0.4
477,951 - CSW01_16945 0.84 +0.4
477,985 + +0.4
477,995 + +0.6
478,034 + +0.7
478,042 - +0.5
478,081 - +0.4
478,287 + -1.5
478,318 - -1.1
478,321 + -1.3
478,323 + -0.7
478,329 - +0.6
478,331 - -0.4
478,471 + CSW01_16950 0.12 -0.2
478,471 + CSW01_16950 0.12 -1.1
478,471 + CSW01_16950 0.12 -0.8
478,471 + CSW01_16950 0.12 -1.6
478,471 + CSW01_16950 0.12 -0.9
478,471 + CSW01_16950 0.12 +0.3
478,471 + CSW01_16950 0.12 -0.4
478,479 - CSW01_16950 0.13 -1.2
478,479 - CSW01_16950 0.13 +0.3
478,479 - CSW01_16950 0.13 -0.0
478,663 - CSW01_16950 0.24 -2.0
478,802 + CSW01_16950 0.32 -0.6
478,843 + CSW01_16950 0.35 -2.3
478,973 + CSW01_16950 0.43 -0.5
479,628 + CSW01_16950 0.82 -0.9
479,628 + CSW01_16950 0.82 -0.6
479,628 + CSW01_16950 0.82 -0.7
479,636 - CSW01_16950 0.82 -1.6
479,636 - CSW01_16950 0.82 -1.5
479,636 - CSW01_16950 0.82 -1.1
479,728 + CSW01_16950 0.88 -1.2
479,745 - CSW01_16950 0.89 -1.2
479,838 - -1.9
479,838 - -0.8
479,920 - +1.0
479,931 - -1.3
479,998 - +0.7
480,121 - +0.5
480,130 + -0.7
480,139 - +0.1
480,186 + +0.1
480,194 - +0.2
480,196 + -0.1
480,282 + -0.8
480,300 - -0.2
480,340 + CSW01_16955 0.10 +0.4
480,389 - CSW01_16955 0.13 +0.5
480,419 + CSW01_16955 0.15 +0.1
480,419 + CSW01_16955 0.15 +0.8
480,427 - CSW01_16955 0.15 +1.2
480,427 - CSW01_16955 0.15 +0.6
480,453 - CSW01_16955 0.17 +0.4
480,610 + CSW01_16955 0.26 +0.7
480,618 - CSW01_16955 0.26 +0.4
480,618 - CSW01_16955 0.26 +0.2
480,625 + CSW01_16955 0.27 +0.5
480,644 - CSW01_16955 0.28 +0.4
480,644 - CSW01_16955 0.28 +0.6
480,644 - CSW01_16955 0.28 +0.5
480,644 - CSW01_16955 0.28 +1.3
480,739 + CSW01_16955 0.33 +0.3
480,747 - CSW01_16955 0.34 -0.3
480,747 - CSW01_16955 0.34 +1.8
480,747 - CSW01_16955 0.34 -0.9
480,845 - CSW01_16955 0.39 -0.1
480,859 - CSW01_16955 0.40 +0.1
480,887 + CSW01_16955 0.42 +0.2
480,897 + CSW01_16955 0.42 +1.7
480,897 + CSW01_16955 0.42 +1.5
480,905 - CSW01_16955 0.43 +0.4
480,905 - CSW01_16955 0.43 -0.8

Or see this region's nucleotide sequence