Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14415

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14410 and CSW01_14415 are separated by 304 nucleotidesCSW01_14415 and CSW01_14420 are separated by 191 nucleotides CSW01_14410: CSW01_14410 - sodium-independent anion transporter, at 86,657 to 88,318 _14410 CSW01_14415: CSW01_14415 - 1,4-alpha-glucan branching protein, at 88,623 to 88,955 _14415 CSW01_14420: CSW01_14420 - peptidase M23, at 89,147 to 90,439 _14420 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 87.626 kb on + strand, within CSW01_14410at 87.646 kb on + strand, within CSW01_14410at 87.654 kb on - strand, within CSW01_14410at 87.670 kb on + strand, within CSW01_14410at 87.678 kb on - strand, within CSW01_14410at 87.699 kb on - strand, within CSW01_14410at 87.721 kb on - strand, within CSW01_14410at 87.722 kb on - strand, within CSW01_14410at 87.782 kb on + strand, within CSW01_14410at 87.782 kb on + strand, within CSW01_14410at 87.782 kb on - strand, within CSW01_14410at 87.791 kb on - strand, within CSW01_14410at 87.796 kb on + strand, within CSW01_14410at 87.804 kb on - strand, within CSW01_14410at 87.806 kb on - strand, within CSW01_14410at 87.864 kb on + strand, within CSW01_14410at 87.872 kb on - strand, within CSW01_14410at 87.872 kb on - strand, within CSW01_14410at 87.896 kb on + strand, within CSW01_14410at 87.896 kb on + strand, within CSW01_14410at 87.913 kb on - strand, within CSW01_14410at 87.992 kb on + strand, within CSW01_14410at 87.992 kb on + strand, within CSW01_14410at 88.000 kb on - strand, within CSW01_14410at 88.000 kb on - strand, within CSW01_14410at 88.006 kb on + strand, within CSW01_14410at 88.025 kb on - strand, within CSW01_14410at 88.060 kb on - strand, within CSW01_14410at 88.094 kb on + strand, within CSW01_14410at 88.275 kb on + strandat 88.381 kb on + strandat 88.393 kb on - strandat 88.491 kb on + strandat 88.874 kb on - strand, within CSW01_14415at 88.997 kb on + strandat 88.997 kb on + strandat 88.997 kb on + strandat 88.997 kb on + strandat 89.083 kb on + strandat 89.110 kb on - strandat 89.110 kb on - strandat 89.122 kb on - strandat 89.262 kb on - strandat 89.267 kb on + strandat 89.322 kb on - strand, within CSW01_14420at 89.334 kb on + strand, within CSW01_14420at 89.334 kb on + strand, within CSW01_14420at 89.352 kb on - strand, within CSW01_14420at 89.352 kb on - strand, within CSW01_14420at 89.372 kb on + strand, within CSW01_14420at 89.395 kb on + strand, within CSW01_14420at 89.494 kb on + strand, within CSW01_14420at 89.576 kb on + strand, within CSW01_14420at 89.584 kb on - strand, within CSW01_14420at 89.908 kb on + strand, within CSW01_14420

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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87,626 + CSW01_14410 0.58 -0.3
87,646 + CSW01_14410 0.60 -0.8
87,654 - CSW01_14410 0.60 +0.0
87,670 + CSW01_14410 0.61 +0.5
87,678 - CSW01_14410 0.61 +0.6
87,699 - CSW01_14410 0.63 -0.1
87,721 - CSW01_14410 0.64 +1.3
87,722 - CSW01_14410 0.64 +0.6
87,782 + CSW01_14410 0.68 -0.4
87,782 + CSW01_14410 0.68 +0.4
87,782 - CSW01_14410 0.68 +0.1
87,791 - CSW01_14410 0.68 -0.7
87,796 + CSW01_14410 0.69 -0.6
87,804 - CSW01_14410 0.69 +0.1
87,806 - CSW01_14410 0.69 +1.0
87,864 + CSW01_14410 0.73 -2.1
87,872 - CSW01_14410 0.73 +0.3
87,872 - CSW01_14410 0.73 +0.0
87,896 + CSW01_14410 0.75 +1.8
87,896 + CSW01_14410 0.75 -0.5
87,913 - CSW01_14410 0.76 -0.7
87,992 + CSW01_14410 0.80 -0.6
87,992 + CSW01_14410 0.80 +0.4
88,000 - CSW01_14410 0.81 -0.7
88,000 - CSW01_14410 0.81 -0.2
88,006 + CSW01_14410 0.81 +0.8
88,025 - CSW01_14410 0.82 -0.7
88,060 - CSW01_14410 0.84 +0.8
88,094 + CSW01_14410 0.86 -0.6
88,275 + +0.1
88,381 + +0.1
88,393 - -1.6
88,491 + +0.6
88,874 - CSW01_14415 0.75 +0.1
88,997 + +0.1
88,997 + -0.1
88,997 + -2.1
88,997 + -0.2
89,083 + -0.0
89,110 - +1.7
89,110 - -0.3
89,122 - -0.9
89,262 - +0.6
89,267 + +1.8
89,322 - CSW01_14420 0.14 -1.7
89,334 + CSW01_14420 0.14 -1.5
89,334 + CSW01_14420 0.14 +1.0
89,352 - CSW01_14420 0.16 +0.0
89,352 - CSW01_14420 0.16 -1.1
89,372 + CSW01_14420 0.17 +0.1
89,395 + CSW01_14420 0.19 -0.2
89,494 + CSW01_14420 0.27 -0.1
89,576 + CSW01_14420 0.33 -0.2
89,584 - CSW01_14420 0.34 -0.0
89,908 + CSW01_14420 0.59 +0.7

Or see this region's nucleotide sequence