Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14270

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14260 and CSW01_14265 are separated by 131 nucleotidesCSW01_14265 and CSW01_14270 are separated by 232 nucleotidesCSW01_14270 and CSW01_14275 are separated by 194 nucleotides CSW01_14260: CSW01_14260 - cation tolerance protein CutA, at 50,072 to 50,830 _14260 CSW01_14265: CSW01_14265 - N-acetyltransferase, at 50,962 to 51,246 _14265 CSW01_14270: CSW01_14270 - protease, at 51,479 to 54,733 _14270 CSW01_14275: CSW01_14275 - HlyD family secretion protein, at 54,928 to 56,058 _14275 Position (kb) 51 52 53 54 55Strain fitness (log2 ratio) -1 0 1 2at 50.481 kb on - strand, within CSW01_14260at 50.524 kb on + strand, within CSW01_14260at 50.712 kb on + strand, within CSW01_14260at 50.724 kb on + strand, within CSW01_14260at 50.725 kb on - strand, within CSW01_14260at 50.725 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.734 kb on + strand, within CSW01_14260at 50.864 kb on + strandat 50.964 kb on + strandat 50.964 kb on + strandat 51.207 kb on + strand, within CSW01_14265at 51.215 kb on - strand, within CSW01_14265at 51.260 kb on - strandat 51.383 kb on + strandat 51.502 kb on + strandat 51.512 kb on - strandat 51.512 kb on - strandat 51.516 kb on + strandat 51.524 kb on - strandat 51.740 kb on + strandat 51.815 kb on + strand, within CSW01_14270at 51.938 kb on + strand, within CSW01_14270at 51.943 kb on + strand, within CSW01_14270at 51.961 kb on + strand, within CSW01_14270at 51.961 kb on + strand, within CSW01_14270at 51.969 kb on - strand, within CSW01_14270at 51.969 kb on - strand, within CSW01_14270at 51.969 kb on - strand, within CSW01_14270at 51.982 kb on + strand, within CSW01_14270at 52.070 kb on - strand, within CSW01_14270at 52.089 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.090 kb on + strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.098 kb on - strand, within CSW01_14270at 52.186 kb on + strand, within CSW01_14270at 52.186 kb on + strand, within CSW01_14270at 52.186 kb on + strand, within CSW01_14270at 52.193 kb on + strand, within CSW01_14270at 52.193 kb on + strand, within CSW01_14270at 52.203 kb on + strand, within CSW01_14270at 52.217 kb on + strand, within CSW01_14270at 52.223 kb on - strand, within CSW01_14270at 52.425 kb on + strand, within CSW01_14270at 52.435 kb on - strand, within CSW01_14270at 52.856 kb on + strand, within CSW01_14270at 52.857 kb on + strand, within CSW01_14270at 52.863 kb on - strand, within CSW01_14270at 53.074 kb on - strand, within CSW01_14270at 53.128 kb on + strand, within CSW01_14270at 53.130 kb on + strand, within CSW01_14270at 53.131 kb on + strand, within CSW01_14270at 53.131 kb on + strand, within CSW01_14270at 53.138 kb on + strand, within CSW01_14270at 53.205 kb on - strand, within CSW01_14270at 53.210 kb on + strand, within CSW01_14270at 53.210 kb on - strand, within CSW01_14270at 53.261 kb on + strand, within CSW01_14270at 53.269 kb on - strand, within CSW01_14270at 53.286 kb on + strand, within CSW01_14270at 53.286 kb on + strand, within CSW01_14270at 53.286 kb on + strand, within CSW01_14270at 53.286 kb on + strand, within CSW01_14270at 53.286 kb on + strand, within CSW01_14270at 53.286 kb on + strand, within CSW01_14270at 53.294 kb on - strand, within CSW01_14270at 53.313 kb on + strand, within CSW01_14270at 53.419 kb on + strand, within CSW01_14270at 53.424 kb on + strand, within CSW01_14270at 53.424 kb on + strand, within CSW01_14270at 53.424 kb on + strand, within CSW01_14270at 53.443 kb on + strand, within CSW01_14270at 53.451 kb on - strand, within CSW01_14270at 53.559 kb on + strand, within CSW01_14270at 53.704 kb on - strand, within CSW01_14270at 53.832 kb on - strand, within CSW01_14270at 53.846 kb on - strand, within CSW01_14270at 53.846 kb on - strand, within CSW01_14270at 53.846 kb on - strand, within CSW01_14270at 53.858 kb on - strand, within CSW01_14270at 53.877 kb on - strand, within CSW01_14270at 54.093 kb on + strand, within CSW01_14270at 54.093 kb on + strand, within CSW01_14270at 54.101 kb on - strand, within CSW01_14270at 54.115 kb on + strand, within CSW01_14270at 54.129 kb on + strand, within CSW01_14270at 54.129 kb on + strand, within CSW01_14270at 54.147 kb on + strand, within CSW01_14270at 54.175 kb on + strand, within CSW01_14270at 54.175 kb on + strand, within CSW01_14270at 54.367 kb on - strand, within CSW01_14270at 54.373 kb on + strand, within CSW01_14270at 54.407 kb on - strand, within CSW01_14270at 54.433 kb on + strandat 54.532 kb on - strandat 54.559 kb on + strandat 54.567 kb on - strandat 54.735 kb on + strandat 54.814 kb on - strandat 54.822 kb on + strandat 54.853 kb on + strandat 54.931 kb on - strandat 55.134 kb on - strand, within CSW01_14275at 55.149 kb on - strand, within CSW01_14275at 55.198 kb on - strand, within CSW01_14275at 55.283 kb on + strand, within CSW01_14275at 55.286 kb on - strand, within CSW01_14275at 55.291 kb on - strand, within CSW01_14275at 55.331 kb on + strand, within CSW01_14275at 55.432 kb on + strand, within CSW01_14275at 55.445 kb on - strand, within CSW01_14275at 55.447 kb on + strand, within CSW01_14275at 55.519 kb on - strand, within CSW01_14275at 55.650 kb on - strand, within CSW01_14275at 55.703 kb on - strand, within CSW01_14275at 55.704 kb on - strand, within CSW01_14275at 55.710 kb on - strand, within CSW01_14275at 55.722 kb on + strand, within CSW01_14275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
remove
50,481 - CSW01_14260 0.54 -0.1
50,524 + CSW01_14260 0.60 -0.7
50,712 + CSW01_14260 0.84 -0.0
50,724 + CSW01_14260 0.86 -0.3
50,725 - CSW01_14260 0.86 +0.5
50,725 - CSW01_14260 0.86 +0.4
50,732 - CSW01_14260 0.87 -0.6
50,732 - CSW01_14260 0.87 +0.1
50,732 - CSW01_14260 0.87 +0.4
50,734 + CSW01_14260 0.87 +0.3
50,864 + +0.0
50,964 + -1.3
50,964 + +0.9
51,207 + CSW01_14265 0.86 +0.1
51,215 - CSW01_14265 0.89 -0.6
51,260 - +0.0
51,383 + -0.8
51,502 + -0.5
51,512 - +0.7
51,512 - -0.2
51,516 + +1.3
51,524 - +0.6
51,740 + +0.1
51,815 + CSW01_14270 0.10 -0.4
51,938 + CSW01_14270 0.14 +1.3
51,943 + CSW01_14270 0.14 -0.1
51,961 + CSW01_14270 0.15 +0.3
51,961 + CSW01_14270 0.15 -0.2
51,969 - CSW01_14270 0.15 +0.0
51,969 - CSW01_14270 0.15 -0.8
51,969 - CSW01_14270 0.15 +0.4
51,982 + CSW01_14270 0.15 +1.7
52,070 - CSW01_14270 0.18 +0.1
52,089 + CSW01_14270 0.19 -0.6
52,090 + CSW01_14270 0.19 -0.7
52,090 + CSW01_14270 0.19 +0.3
52,090 + CSW01_14270 0.19 -1.1
52,090 + CSW01_14270 0.19 +0.4
52,098 - CSW01_14270 0.19 -0.2
52,098 - CSW01_14270 0.19 -0.2
52,098 - CSW01_14270 0.19 -0.1
52,098 - CSW01_14270 0.19 +0.5
52,098 - CSW01_14270 0.19 -0.0
52,186 + CSW01_14270 0.22 +0.3
52,186 + CSW01_14270 0.22 +0.5
52,186 + CSW01_14270 0.22 -0.8
52,193 + CSW01_14270 0.22 +0.0
52,193 + CSW01_14270 0.22 -0.4
52,203 + CSW01_14270 0.22 -0.6
52,217 + CSW01_14270 0.23 +1.4
52,223 - CSW01_14270 0.23 +0.0
52,425 + CSW01_14270 0.29 -0.3
52,435 - CSW01_14270 0.29 +0.7
52,856 + CSW01_14270 0.42 -0.6
52,857 + CSW01_14270 0.42 +0.1
52,863 - CSW01_14270 0.43 +0.6
53,074 - CSW01_14270 0.49 -0.0
53,128 + CSW01_14270 0.51 -0.2
53,130 + CSW01_14270 0.51 -0.2
53,131 + CSW01_14270 0.51 -0.0
53,131 + CSW01_14270 0.51 -0.1
53,138 + CSW01_14270 0.51 +0.8
53,205 - CSW01_14270 0.53 -0.5
53,210 + CSW01_14270 0.53 -0.0
53,210 - CSW01_14270 0.53 +0.3
53,261 + CSW01_14270 0.55 -0.3
53,269 - CSW01_14270 0.55 +0.0
53,286 + CSW01_14270 0.56 -1.3
53,286 + CSW01_14270 0.56 +0.1
53,286 + CSW01_14270 0.56 -0.6
53,286 + CSW01_14270 0.56 +0.6
53,286 + CSW01_14270 0.56 -0.1
53,286 + CSW01_14270 0.56 +1.1
53,294 - CSW01_14270 0.56 +0.5
53,313 + CSW01_14270 0.56 +0.1
53,419 + CSW01_14270 0.60 -0.6
53,424 + CSW01_14270 0.60 +0.3
53,424 + CSW01_14270 0.60 -0.1
53,424 + CSW01_14270 0.60 -0.5
53,443 + CSW01_14270 0.60 -0.5
53,451 - CSW01_14270 0.61 +0.6
53,559 + CSW01_14270 0.64 -0.0
53,704 - CSW01_14270 0.68 +0.2
53,832 - CSW01_14270 0.72 -0.3
53,846 - CSW01_14270 0.73 +2.2
53,846 - CSW01_14270 0.73 -0.2
53,846 - CSW01_14270 0.73 -1.0
53,858 - CSW01_14270 0.73 +0.6
53,877 - CSW01_14270 0.74 -0.3
54,093 + CSW01_14270 0.80 -0.9
54,093 + CSW01_14270 0.80 -0.2
54,101 - CSW01_14270 0.81 -0.6
54,115 + CSW01_14270 0.81 -0.1
54,129 + CSW01_14270 0.81 +0.3
54,129 + CSW01_14270 0.81 +0.1
54,147 + CSW01_14270 0.82 -0.4
54,175 + CSW01_14270 0.83 +0.4
54,175 + CSW01_14270 0.83 -0.7
54,367 - CSW01_14270 0.89 -0.2
54,373 + CSW01_14270 0.89 +0.4
54,407 - CSW01_14270 0.90 -0.3
54,433 + -0.5
54,532 - +0.7
54,559 + -0.6
54,567 - -0.1
54,735 + -0.1
54,814 - +0.3
54,822 + +0.4
54,853 + -0.6
54,931 - +1.1
55,134 - CSW01_14275 0.18 +0.6
55,149 - CSW01_14275 0.20 -0.3
55,198 - CSW01_14275 0.24 -0.5
55,283 + CSW01_14275 0.31 -0.2
55,286 - CSW01_14275 0.32 +0.1
55,291 - CSW01_14275 0.32 -0.0
55,331 + CSW01_14275 0.36 +0.1
55,432 + CSW01_14275 0.45 -0.5
55,445 - CSW01_14275 0.46 +0.4
55,447 + CSW01_14275 0.46 -0.1
55,519 - CSW01_14275 0.52 -0.3
55,650 - CSW01_14275 0.64 +0.4
55,703 - CSW01_14275 0.69 -0.4
55,704 - CSW01_14275 0.69 -0.4
55,710 - CSW01_14275 0.69 +0.4
55,722 + CSW01_14275 0.70 +0.6

Or see this region's nucleotide sequence