Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14250

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14240 and CSW01_14245 overlap by 4 nucleotidesCSW01_14245 and CSW01_14250 are separated by 198 nucleotidesCSW01_14250 and CSW01_14255 are separated by 538 nucleotides CSW01_14240: CSW01_14240 - SCO family protein, at 46,103 to 46,684 _14240 CSW01_14245: CSW01_14245 - hypothetical protein, at 46,681 to 47,103 _14245 CSW01_14250: CSW01_14250 - DUF368 domain-containing protein, at 47,302 to 48,228 _14250 CSW01_14255: CSW01_14255 - sodium/glutamate symporter, at 48,767 to 49,993 _14255 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1 2 3at 46.389 kb on - strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.497 kb on - strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.576 kb on + strand, within CSW01_14240at 46.581 kb on + strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.712 kb on - strandat 46.787 kb on + strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.902 kb on - strand, within CSW01_14245at 46.928 kb on + strand, within CSW01_14245at 46.945 kb on + strand, within CSW01_14245at 47.095 kb on + strandat 47.129 kb on + strandat 47.261 kb on - strandat 47.283 kb on - strandat 47.286 kb on + strandat 47.656 kb on + strand, within CSW01_14250at 47.874 kb on + strand, within CSW01_14250at 48.067 kb on + strand, within CSW01_14250at 48.301 kb on + strandat 48.509 kb on + strandat 48.694 kb on + strandat 48.694 kb on + strandat 48.702 kb on - strandat 48.721 kb on - strandat 48.799 kb on - strandat 48.934 kb on - strand, within CSW01_14255at 49.018 kb on + strand, within CSW01_14255at 49.033 kb on + strand, within CSW01_14255at 49.041 kb on - strand, within CSW01_14255at 49.099 kb on - strand, within CSW01_14255at 49.124 kb on + strand, within CSW01_14255at 49.132 kb on - strand, within CSW01_14255at 49.164 kb on + strand, within CSW01_14255at 49.172 kb on - strand, within CSW01_14255at 49.172 kb on - strand, within CSW01_14255at 49.174 kb on + strand, within CSW01_14255at 49.194 kb on - strand, within CSW01_14255

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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46,389 - CSW01_14240 0.49 -0.7
46,391 + CSW01_14240 0.49 -0.4
46,391 + CSW01_14240 0.49 +0.3
46,436 + CSW01_14240 0.57 -0.3
46,436 + CSW01_14240 0.57 +1.7
46,436 + CSW01_14240 0.57 +0.0
46,444 - CSW01_14240 0.59 -0.1
46,444 - CSW01_14240 0.59 +0.1
46,477 + CSW01_14240 0.64 +1.1
46,477 + CSW01_14240 0.64 +0.3
46,477 + CSW01_14240 0.64 -0.7
46,485 - CSW01_14240 0.66 -0.1
46,485 - CSW01_14240 0.66 -0.6
46,485 - CSW01_14240 0.66 -0.3
46,497 - CSW01_14240 0.68 +0.2
46,571 + CSW01_14240 0.80 +0.4
46,571 + CSW01_14240 0.80 -0.1
46,576 + CSW01_14240 0.81 -0.2
46,581 + CSW01_14240 0.82 +0.0
46,589 - CSW01_14240 0.84 -0.3
46,589 - CSW01_14240 0.84 -0.3
46,712 - +1.2
46,787 + CSW01_14245 0.25 -0.4
46,797 - CSW01_14245 0.27 -0.2
46,797 - CSW01_14245 0.27 -0.2
46,797 - CSW01_14245 0.27 +2.8
46,797 - CSW01_14245 0.27 +0.7
46,797 - CSW01_14245 0.27 +0.5
46,797 - CSW01_14245 0.27 +1.4
46,902 - CSW01_14245 0.52 -0.2
46,928 + CSW01_14245 0.58 +1.5
46,945 + CSW01_14245 0.62 +0.3
47,095 + -0.7
47,129 + -0.7
47,261 - +1.0
47,283 - +0.3
47,286 + +0.3
47,656 + CSW01_14250 0.38 +1.8
47,874 + CSW01_14250 0.62 -0.2
48,067 + CSW01_14250 0.83 +1.6
48,301 + +0.4
48,509 + -0.0
48,694 + -0.6
48,694 + +0.4
48,702 - -0.6
48,721 - +1.3
48,799 - +0.1
48,934 - CSW01_14255 0.14 -0.5
49,018 + CSW01_14255 0.20 +0.6
49,033 + CSW01_14255 0.22 +0.2
49,041 - CSW01_14255 0.22 -0.2
49,099 - CSW01_14255 0.27 -0.0
49,124 + CSW01_14255 0.29 +0.7
49,132 - CSW01_14255 0.30 -0.1
49,164 + CSW01_14255 0.32 -1.3
49,172 - CSW01_14255 0.33 +0.9
49,172 - CSW01_14255 0.33 -0.1
49,174 + CSW01_14255 0.33 +0.6
49,194 - CSW01_14255 0.35 +0.2

Or see this region's nucleotide sequence