Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14175

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14170 and CSW01_14175 are separated by 277 nucleotidesCSW01_14175 and CSW01_14180 are separated by 95 nucleotides CSW01_14170: CSW01_14170 - AEC family transporter, at 29,213 to 30,205 _14170 CSW01_14175: CSW01_14175 - Anion transporter, at 30,483 to 31,871 _14175 CSW01_14180: CSW01_14180 - hypothetical protein, at 31,967 to 32,602 _14180 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1 2at 29.531 kb on - strand, within CSW01_14170at 29.546 kb on + strand, within CSW01_14170at 29.601 kb on - strand, within CSW01_14170at 29.691 kb on + strand, within CSW01_14170at 29.776 kb on + strand, within CSW01_14170at 29.816 kb on - strand, within CSW01_14170at 29.870 kb on + strand, within CSW01_14170at 29.906 kb on - strand, within CSW01_14170at 29.945 kb on + strand, within CSW01_14170at 30.013 kb on + strand, within CSW01_14170at 30.073 kb on + strand, within CSW01_14170at 30.184 kb on - strandat 30.189 kb on - strandat 30.340 kb on - strandat 30.462 kb on - strandat 30.462 kb on - strandat 30.587 kb on + strandat 30.603 kb on + strandat 30.653 kb on + strand, within CSW01_14175at 30.736 kb on + strand, within CSW01_14175at 30.800 kb on + strand, within CSW01_14175at 30.800 kb on + strand, within CSW01_14175at 30.817 kb on + strand, within CSW01_14175at 30.827 kb on + strand, within CSW01_14175at 30.827 kb on + strand, within CSW01_14175at 30.885 kb on + strand, within CSW01_14175at 31.051 kb on + strand, within CSW01_14175at 31.260 kb on + strand, within CSW01_14175at 31.260 kb on + strand, within CSW01_14175at 31.261 kb on - strand, within CSW01_14175at 31.327 kb on + strand, within CSW01_14175at 31.332 kb on + strand, within CSW01_14175at 31.340 kb on - strand, within CSW01_14175at 31.340 kb on - strand, within CSW01_14175at 31.462 kb on + strand, within CSW01_14175at 31.582 kb on - strand, within CSW01_14175at 31.590 kb on - strand, within CSW01_14175at 31.688 kb on - strand, within CSW01_14175at 31.698 kb on - strand, within CSW01_14175at 31.723 kb on + strand, within CSW01_14175at 31.731 kb on - strand, within CSW01_14175at 31.746 kb on - strandat 31.809 kb on - strandat 31.941 kb on - strandat 32.088 kb on + strand, within CSW01_14180at 32.088 kb on + strand, within CSW01_14180at 32.112 kb on - strand, within CSW01_14180at 32.114 kb on + strand, within CSW01_14180at 32.122 kb on - strand, within CSW01_14180at 32.244 kb on + strand, within CSW01_14180at 32.476 kb on + strand, within CSW01_14180at 32.476 kb on + strand, within CSW01_14180at 32.484 kb on - strand, within CSW01_14180at 32.544 kb on - strandat 32.588 kb on - strandat 32.588 kb on - strandat 32.596 kb on - strandat 32.634 kb on + strandat 32.677 kb on + strandat 32.677 kb on + strandat 32.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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29,531 - CSW01_14170 0.32 +0.4
29,546 + CSW01_14170 0.34 -0.4
29,601 - CSW01_14170 0.39 -0.1
29,691 + CSW01_14170 0.48 -0.1
29,776 + CSW01_14170 0.57 -1.6
29,816 - CSW01_14170 0.61 +0.4
29,870 + CSW01_14170 0.66 +0.2
29,906 - CSW01_14170 0.70 +0.3
29,945 + CSW01_14170 0.74 +0.4
30,013 + CSW01_14170 0.81 -0.1
30,073 + CSW01_14170 0.87 -0.6
30,184 - -1.1
30,189 - -0.3
30,340 - +1.2
30,462 - -0.2
30,462 - -0.6
30,587 + -0.3
30,603 + -0.2
30,653 + CSW01_14175 0.12 -0.2
30,736 + CSW01_14175 0.18 -0.9
30,800 + CSW01_14175 0.23 +1.0
30,800 + CSW01_14175 0.23 +0.3
30,817 + CSW01_14175 0.24 -0.4
30,827 + CSW01_14175 0.25 -0.4
30,827 + CSW01_14175 0.25 +1.2
30,885 + CSW01_14175 0.29 -0.3
31,051 + CSW01_14175 0.41 +0.4
31,260 + CSW01_14175 0.56 +0.0
31,260 + CSW01_14175 0.56 -0.5
31,261 - CSW01_14175 0.56 +0.1
31,327 + CSW01_14175 0.61 +0.0
31,332 + CSW01_14175 0.61 -0.1
31,340 - CSW01_14175 0.62 -0.6
31,340 - CSW01_14175 0.62 -1.6
31,462 + CSW01_14175 0.70 -0.0
31,582 - CSW01_14175 0.79 -0.1
31,590 - CSW01_14175 0.80 -1.6
31,688 - CSW01_14175 0.87 +0.1
31,698 - CSW01_14175 0.87 -0.1
31,723 + CSW01_14175 0.89 -0.2
31,731 - CSW01_14175 0.90 +0.3
31,746 - -0.8
31,809 - -1.3
31,941 - +0.0
32,088 + CSW01_14180 0.19 +0.4
32,088 + CSW01_14180 0.19 +0.1
32,112 - CSW01_14180 0.23 -0.9
32,114 + CSW01_14180 0.23 +0.3
32,122 - CSW01_14180 0.24 +0.2
32,244 + CSW01_14180 0.44 +0.3
32,476 + CSW01_14180 0.80 -0.1
32,476 + CSW01_14180 0.80 +0.5
32,484 - CSW01_14180 0.81 -0.4
32,544 - -0.6
32,588 - -0.1
32,588 - -0.6
32,596 - -0.8
32,634 + -0.2
32,677 + +2.1
32,677 + +0.6
32,686 - +0.4

Or see this region's nucleotide sequence