Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13975

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_18HR_ZN21A
2,974,974	+		CSW01_13970	0.57	-0.3
2,974,974	+		CSW01_13970	0.57	+0.4
2,974,974	+		CSW01_13970	0.57	+0.5
2,974,974	+		CSW01_13970	0.57	+0.2
2,974,982	-		CSW01_13970	0.57	-0.1
2,974,982	-		CSW01_13970	0.57	-0.3
2,974,982	-		CSW01_13970	0.57	+0.1
2,974,982	-		CSW01_13970	0.57	-0.1
2,974,982	-		CSW01_13970	0.57	+0.1
2,974,982	-		CSW01_13970	0.57	+0.2
2,974,982	-		CSW01_13970	0.57	-0.1
2,974,982	-		CSW01_13970	0.57	-0.3
2,974,992	+		CSW01_13970	0.57	-0.6
2,974,992	-		CSW01_13970	0.57	-0.8
2,974,997	+		CSW01_13970	0.58	-0.2
2,974,997	+		CSW01_13970	0.58	+0.2
2,975,000	-		CSW01_13970	0.58	+0.5
2,975,021	-		CSW01_13970	0.59	-1.0
2,975,028	+		CSW01_13970	0.59	-0.5
2,975,041	+		CSW01_13970	0.60	-0.3
2,975,041	+		CSW01_13970	0.60	-0.0
2,975,049	-		CSW01_13970	0.60	+0.4
2,975,049	-		CSW01_13970	0.60	+0.5
2,975,073	+		CSW01_13970	0.61	+0.9
2,975,088	+		CSW01_13970	0.62	-0.1
2,975,091	+		CSW01_13970	0.62	+1.0
2,975,096	-		CSW01_13970	0.62	-0.0
2,975,098	+		CSW01_13970	0.62	-0.2
2,975,099	+		CSW01_13970	0.62	-0.2
2,975,099	+		CSW01_13970	0.62	-0.8
2,975,104	+		CSW01_13970	0.63	+0.1
2,975,107	-		CSW01_13970	0.63	-0.2
2,975,107	-		CSW01_13970	0.63	+1.0
2,975,107	-		CSW01_13970	0.63	+0.8
2,975,107	-		CSW01_13970	0.63	-0.5
2,975,107	-		CSW01_13970	0.63	+0.1
2,975,107	-		CSW01_13970	0.63	+0.2
2,975,150	-		CSW01_13970	0.65	+0.4
2,975,152	+		CSW01_13970	0.65	-0.5
2,975,152	+		CSW01_13970	0.65	-0.2
2,975,152	+		CSW01_13970	0.65	+0.3
2,975,152	+		CSW01_13970	0.65	+0.9
2,975,152	+		CSW01_13970	0.65	-0.0
2,975,152	+		CSW01_13970	0.65	+0.2
2,975,152	+		CSW01_13970	0.65	+0.1
2,975,152	+		CSW01_13970	0.65	-0.2
2,975,152	+		CSW01_13970	0.65	-1.6
2,975,152	+		CSW01_13970	0.65	-0.0
2,975,152	+		CSW01_13970	0.65	-0.1
2,975,152	+		CSW01_13970	0.65	+0.0
2,975,152	+		CSW01_13970	0.65	-0.0
2,975,152	+		CSW01_13970	0.65	-0.6
2,975,160	-		CSW01_13970	0.65	-0.2
2,975,160	-		CSW01_13970	0.65	+0.8
2,975,160	-		CSW01_13970	0.65	+0.2
2,975,160	-		CSW01_13970	0.65	+1.1
2,975,160	-		CSW01_13970	0.65	-0.7
2,975,160	-		CSW01_13970	0.65	+0.2
2,975,160	-		CSW01_13970	0.65	+0.1
2,975,160	-		CSW01_13970	0.65	+0.1
2,975,160	-		CSW01_13970	0.65	+0.7
2,975,160	-		CSW01_13970	0.65	-0.7
2,975,160	-		CSW01_13970	0.65	-0.2
2,975,160	-		CSW01_13970	0.65	+1.0
2,975,160	-		CSW01_13970	0.65	+0.5
2,975,160	-		CSW01_13970	0.65	+0.2
2,975,160	-		CSW01_13970	0.65	+0.2
2,975,183	-		CSW01_13970	0.66	-1.0
2,975,190	+		CSW01_13970	0.67	-0.0
2,975,280	-		CSW01_13970	0.71	-0.0
2,975,303	-		CSW01_13970	0.72	-0.1
2,975,330	-		CSW01_13970	0.73	+0.1
2,975,344	+		CSW01_13970	0.74	-1.5
2,975,373	-		CSW01_13970	0.75	-0.1
2,975,389	+		CSW01_13970	0.76	-0.0
2,975,407	-		CSW01_13970	0.77	+0.4
2,975,467	-		CSW01_13970	0.79	-1.2
2,975,474	-		CSW01_13970	0.80	-0.7
2,975,519	+		CSW01_13970	0.82	+0.1
2,975,568	-		CSW01_13970	0.84	+1.2
2,975,586	+		CSW01_13970	0.85	-0.3
2,975,588	+		CSW01_13970	0.85	+0.2
2,975,601	+		CSW01_13970	0.85	+0.2
2,975,601	+		CSW01_13970	0.85	-0.0
2,975,608	+		CSW01_13970	0.86	+0.4
2,975,608	+		CSW01_13970	0.86	-0.5
2,975,608	+		CSW01_13970	0.86	+0.7
2,975,608	+		CSW01_13970	0.86	-0.0
2,975,609	-		CSW01_13970	0.86	+0.3
2,975,609	-		CSW01_13970	0.86	+0.1
2,975,609	-		CSW01_13970	0.86	+0.6
2,975,616	-		CSW01_13970	0.86	-1.1
2,975,616	-		CSW01_13970	0.86	+1.0
2,975,616	-		CSW01_13970	0.86	+0.6
2,975,623	+		CSW01_13970	0.87	-0.4
2,975,623	+		CSW01_13970	0.87	-0.3
2,975,631	-		CSW01_13970	0.87	+0.3
2,975,631	-		CSW01_13970	0.87	+0.6
2,975,631	-		CSW01_13970	0.87	-0.0
2,975,661	+		CSW01_13970	0.88	+1.8
2,975,666	+		CSW01_13970	0.88	-0.3
2,975,666	+		CSW01_13970	0.88	+0.7
2,975,671	+		CSW01_13970	0.89	+0.4
2,975,671	+		CSW01_13970	0.89	+1.2
2,975,671	+		CSW01_13970	0.89	+0.5
2,975,671	+		CSW01_13970	0.89	+0.1
2,975,671	+		CSW01_13970	0.89	-0.1
2,975,674	-		CSW01_13970	0.89	+0.7
2,975,674	-		CSW01_13970	0.89	-0.1
2,975,679	-		CSW01_13970	0.89	+0.6
2,975,679	-		CSW01_13970	0.89	-0.2
2,975,679	-		CSW01_13970	0.89	-0.7
2,975,679	-		CSW01_13970	0.89	-0.0
2,975,684	-		CSW01_13970	0.89	+0.6
2,975,695	-		CSW01_13970	0.90	+0.1
2,975,720	+				+0.4
2,975,723	-				+0.0
2,975,723	-				-0.8
2,975,728	+				+0.2
2,975,729	-				-0.4
2,975,729	-				+0.2
2,975,736	-				-0.5
2,975,736	-				+0.6
2,975,744	+				-0.2
2,975,754	+				-0.2
2,975,754	+				-0.5
2,975,760	-				+0.1
2,975,834	+				-0.7
2,975,834	+				-0.6
2,975,842	-				-0.6
2,975,842	-				+0.5
2,975,880	+				-0.3
2,975,880	+				+0.6
2,975,898	-				+0.2
2,975,900	+				-0.0
2,975,910	+				+0.2
2,975,988	+				-0.5
2,976,073	-		CSW01_13975	0.11	+3.1
2,976,077	+		CSW01_13975	0.12	-0.4
2,976,077	+		CSW01_13975	0.12	-0.2
2,976,085	-		CSW01_13975	0.12	-1.5
2,976,122	+		CSW01_13975	0.16	-0.7
2,976,122	+		CSW01_13975	0.16	-0.1
2,976,122	+		CSW01_13975	0.16	-0.9
2,976,122	+		CSW01_13975	0.16	+0.5
2,976,122	+		CSW01_13975	0.16	+0.1
2,976,122	+		CSW01_13975	0.16	+0.5
2,976,122	+		CSW01_13975	0.16	-0.3
2,976,130	-		CSW01_13975	0.16	+0.1
2,976,130	-		CSW01_13975	0.16	+0.4
2,976,130	-		CSW01_13975	0.16	+0.3
2,976,130	-		CSW01_13975	0.16	-0.9
2,976,130	-		CSW01_13975	0.16	-0.2
2,976,130	-		CSW01_13975	0.16	+0.1
2,976,133	+		CSW01_13975	0.16	-0.4
2,976,141	-		CSW01_13975	0.17	-0.7
2,976,142	-		CSW01_13975	0.17	-0.6
2,976,147	+		CSW01_13975	0.18	+0.6
2,976,147	+		CSW01_13975	0.18	-0.1
2,976,152	+		CSW01_13975	0.18	+1.2
2,976,152	+		CSW01_13975	0.18	+0.5
2,976,155	-		CSW01_13975	0.18	-0.5
2,976,155	-		CSW01_13975	0.18	+0.1
2,976,155	-		CSW01_13975	0.18	+0.6
2,976,155	-		CSW01_13975	0.18	-0.8
2,976,160	-		CSW01_13975	0.19	-0.8
2,976,160	-		CSW01_13975	0.19	-0.5
2,976,170	-		CSW01_13975	0.20	-1.4
2,976,198	+		CSW01_13975	0.22	-0.4
2,976,229	+		CSW01_13975	0.25	-0.8
2,976,232	+		CSW01_13975	0.25	-0.0
2,976,268	+		CSW01_13975	0.28	-0.6
2,976,281	-		CSW01_13975	0.29	+1.0
2,976,298	-		CSW01_13975	0.31	-0.8
2,976,298	-		CSW01_13975	0.31	+1.3
2,976,298	-		CSW01_13975	0.31	-0.0
2,976,298	-		CSW01_13975	0.31	+0.3
2,976,346	-		CSW01_13975	0.35	-0.6
2,976,348	+		CSW01_13975	0.35	+1.0
2,976,348	+		CSW01_13975	0.35	+0.1
2,976,356	-		CSW01_13975	0.36	-0.6
2,976,356	-		CSW01_13975	0.36	-0.4
2,976,356	-		CSW01_13975	0.36	-1.0
2,976,356	-		CSW01_13975	0.36	+0.1
2,976,360	+		CSW01_13975	0.36	-0.8
2,976,360	+		CSW01_13975	0.36	+0.0
2,976,360	+		CSW01_13975	0.36	-0.4
2,976,360	+		CSW01_13975	0.36	+0.4
2,976,368	-		CSW01_13975	0.37	+0.4
2,976,397	-		CSW01_13975	0.39	-0.8
2,976,424	-		CSW01_13975	0.41	+0.3
2,976,436	+		CSW01_13975	0.43	+0.9
2,976,444	-		CSW01_13975	0.43	-0.6
2,976,444	-		CSW01_13975	0.43	+0.1
2,976,455	+		CSW01_13975	0.44	-0.2
2,976,463	-		CSW01_13975	0.45	+1.3
2,976,473	-		CSW01_13975	0.46	+0.0
2,976,479	+		CSW01_13975	0.46	+0.1
2,976,537	-		CSW01_13975	0.51	-0.8
2,976,543	+		CSW01_13975	0.52	+0.1
2,976,579	+		CSW01_13975	0.55	-0.1
2,976,629	+		CSW01_13975	0.59	+0.8
2,976,643	+		CSW01_13975	0.60	+0.4
2,976,651	+		CSW01_13975	0.61	+1.3
2,976,653	+		CSW01_13975	0.61	-0.8
2,976,695	-		CSW01_13975	0.65	-0.9
2,976,719	+		CSW01_13975	0.67	+2.0
2,976,738	+		CSW01_13975	0.68	-1.2
2,976,788	+		CSW01_13975	0.73	-1.5
2,976,789	-		CSW01_13975	0.73	-1.7
2,976,804	+		CSW01_13975	0.74	+0.4
2,976,840	+		CSW01_13975	0.77	+0.4
2,976,840	+		CSW01_13975	0.77	+0.9
2,976,840	+		CSW01_13975	0.77	-0.3
2,976,840	+		CSW01_13975	0.77	+1.0
2,976,848	-		CSW01_13975	0.78	+0.4
2,976,848	-		CSW01_13975	0.78	-1.2
2,976,848	-		CSW01_13975	0.78	-0.3
2,976,883	+		CSW01_13975	0.81	-1.3
2,976,901	+		CSW01_13975	0.82	+0.6
2,976,901	+		CSW01_13975	0.82	+0.1
2,976,903	-		CSW01_13975	0.83	-0.2
2,976,909	-		CSW01_13975	0.83	-0.2
2,976,909	-		CSW01_13975	0.83	-1.3
2,976,909	-		CSW01_13975	0.83	+0.5
2,976,909	-		CSW01_13975	0.83	-0.1
2,976,909	-		CSW01_13975	0.83	+0.6
2,976,909	-		CSW01_13975	0.83	-0.1
2,976,933	+		CSW01_13975	0.85	-0.1
2,976,939	+		CSW01_13975	0.86	-1.0
2,976,940	-		CSW01_13975	0.86	-1.5
2,976,965	+		CSW01_13975	0.88	-0.6
2,976,965	+		CSW01_13975	0.88	-0.4
2,976,965	+		CSW01_13975	0.88	+0.5
2,976,965	+		CSW01_13975	0.88	-0.5
2,976,973	-		CSW01_13975	0.89	-0.0
2,976,973	-		CSW01_13975	0.89	-1.1
2,976,975	+		CSW01_13975	0.89	-0.4
2,976,978	-		CSW01_13975	0.89	+0.2
2,976,978	-		CSW01_13975	0.89	+0.2
2,976,983	-		CSW01_13975	0.90	-0.2
2,976,983	-		CSW01_13975	0.90	-0.1
2,976,985	+		CSW01_13975	0.90	+0.1
2,977,006	-				+0.4
2,977,064	+				+0.1
2,977,064	+				+2.0
2,977,064	+				+0.6
2,977,069	+				+0.0
2,977,072	-				+0.3
2,977,072	-				+0.1
2,977,077	-				+0.5
2,977,077	-				+1.4
2,977,077	-				-0.0
2,977,077	-				-0.5
2,977,098	+				-0.0
2,977,098	+				-0.1
2,977,098	+				-0.0
2,977,098	+				+0.3
2,977,098	+				-0.0
2,977,098	+				-0.0
2,977,098	+				-0.1
2,977,098	+				-0.5
2,977,098	+				+0.3
2,977,099	+				-1.5
2,977,106	-				-0.3
2,977,106	-				-1.2
2,977,106	-				+0.1
2,977,106	-				+1.7
2,977,193	+				-0.2
2,977,193	+				-0.2
2,977,193	+				-1.4
2,977,193	+				-0.2
2,977,193	+				-0.8
2,977,201	-				+0.5
2,977,208	+				+0.6
2,977,266	+		CSW01_13980	0.10	-0.4
2,977,266	+		CSW01_13980	0.10	-0.3
2,977,266	+		CSW01_13980	0.10	+1.1
2,977,271	+		CSW01_13980	0.11	-2.0
2,977,274	-		CSW01_13980	0.11	+0.1
2,977,279	-		CSW01_13980	0.12	+0.2
2,977,290	+		CSW01_13980	0.13	+0.1
2,977,290	-		CSW01_13980	0.13	+0.4
2,977,325	+		CSW01_13980	0.17	-0.1
2,977,330	+		CSW01_13980	0.17	-0.2
2,977,333	-		CSW01_13980	0.18	-0.3
2,977,333	-		CSW01_13980	0.18	+0.4
2,977,359	+		CSW01_13980	0.21	+0.0
2,977,359	+		CSW01_13980	0.21	-0.5
2,977,405	+		CSW01_13980	0.26	-0.3
2,977,405	+		CSW01_13980	0.26	+0.4
2,977,405	+		CSW01_13980	0.26	+0.4
2,977,434	+		CSW01_13980	0.29	-1.0
2,977,434	+		CSW01_13980	0.29	-1.1
2,977,434	+		CSW01_13980	0.29	+0.2
2,977,434	+		CSW01_13980	0.29	+0.4
2,977,434	+		CSW01_13980	0.29	-0.6
2,977,434	+		CSW01_13980	0.29	-0.7
2,977,434	+		CSW01_13980	0.29	-0.2
2,977,434	+		CSW01_13980	0.29	+0.4
2,977,434	+		CSW01_13980	0.29	-2.0
2,977,434	+		CSW01_13980	0.29	-0.4
2,977,434	+		CSW01_13980	0.29	+0.2
2,977,434	+		CSW01_13980	0.29	-0.6
2,977,434	+		CSW01_13980	0.29	+1.0
2,977,439	+		CSW01_13980	0.29	+0.8
2,977,442	-		CSW01_13980	0.30	+0.8
2,977,442	-		CSW01_13980	0.30	-0.7
2,977,442	-		CSW01_13980	0.30	-0.3
2,977,442	-		CSW01_13980	0.30	+0.2
2,977,442	-		CSW01_13980	0.30	+0.5
2,977,442	-		CSW01_13980	0.30	-0.4
2,977,442	-		CSW01_13980	0.30	-1.2
2,977,442	-		CSW01_13980	0.30	+0.3
2,977,442	-		CSW01_13980	0.30	-0.2
2,977,442	-		CSW01_13980	0.30	-1.7
2,977,442	-		CSW01_13980	0.30	+0.6
2,977,442	-		CSW01_13980	0.30	+0.4
2,977,510	+		CSW01_13980	0.37	+0.0
2,977,554	-		CSW01_13980	0.42	-0.5
2,977,599	-		CSW01_13980	0.47	+0.6
2,977,623	-		CSW01_13980	0.50	-0.1
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2,977,657	+		CSW01_13980	0.53	-0.6
2,977,657	+		CSW01_13980	0.53	+0.4
2,977,665	-		CSW01_13980	0.54	-0.9
2,977,665	-		CSW01_13980	0.54	-0.2
2,977,665	-		CSW01_13980	0.54	+0.3
2,977,665	-		CSW01_13980	0.54	+0.8
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2,977,690	-		CSW01_13980	0.57	-0.1
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2,977,700	-		CSW01_13980	0.58	+0.4
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2,977,799	+		CSW01_13980	0.69	-1.0
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2,977,810	+		CSW01_13980	0.70	-0.7
2,977,810	+		CSW01_13980	0.70	+0.0
2,977,818	-		CSW01_13980	0.71	-0.4
2,977,818	-		CSW01_13980	0.71	+0.3
2,977,823	+		CSW01_13980	0.72	-0.3
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2,977,877	+		CSW01_13980	0.78	-0.4
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2,977,885	-		CSW01_13980	0.79	+0.5
2,977,895	+		CSW01_13980	0.80	+0.2
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2,977,903	-		CSW01_13980	0.81	+0.5
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2,977,907	-		CSW01_13980	0.81	-1.2
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2,977,968	+		CSW01_13980	0.88	+0.4
2,977,970	+		CSW01_13980	0.88	-0.2
2,977,970	+		CSW01_13980	0.88	+0.3
2,977,970	+		CSW01_13980	0.88	-1.0
2,977,970	+		CSW01_13980	0.88	-0.0
2,977,970	+		CSW01_13980	0.88	-0.7
2,977,970	+		CSW01_13980	0.88	-0.0
2,977,970	+		CSW01_13980	0.88	-0.3
2,977,976	-		CSW01_13980	0.89	-0.2
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2,977,996	+				-1.0
2,978,004	-				-0.4
2,978,034	-				-0.3
2,978,042	+				-0.6
2,978,050	-				-1.3