Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07045

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07040 and CSW01_07045 are separated by 591 nucleotidesCSW01_07045 and CSW01_07050 are separated by 78 nucleotides CSW01_07040: CSW01_07040 - methyl-accepting chemotaxis protein, at 1,492,632 to 1,494,557 _07040 CSW01_07045: CSW01_07045 - methyl-accepting chemotaxis protein, at 1,495,149 to 1,496,840 _07045 CSW01_07050: CSW01_07050 - hypothetical protein, at 1,496,919 to 1,498,235 _07050 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1494.326 kb on + strand, within CSW01_07040at 1494.326 kb on + strand, within CSW01_07040at 1494.326 kb on + strand, within CSW01_07040at 1494.329 kb on + strand, within CSW01_07040at 1494.337 kb on - strand, within CSW01_07040at 1494.439 kb on + strandat 1494.493 kb on + strandat 1494.501 kb on - strandat 1494.501 kb on - strandat 1494.517 kb on - strandat 1494.529 kb on - strandat 1494.542 kb on - strandat 1494.580 kb on + strandat 1494.581 kb on + strandat 1494.589 kb on - strandat 1494.728 kb on + strandat 1494.731 kb on - strandat 1494.867 kb on - strandat 1494.868 kb on - strandat 1494.879 kb on - strandat 1494.939 kb on + strandat 1494.947 kb on - strandat 1494.947 kb on - strandat 1494.947 kb on - strandat 1495.025 kb on + strandat 1495.025 kb on + strandat 1495.025 kb on + strandat 1495.072 kb on + strandat 1495.095 kb on - strandat 1495.097 kb on + strandat 1495.196 kb on + strandat 1495.196 kb on + strandat 1495.196 kb on + strandat 1495.204 kb on - strandat 1495.256 kb on + strandat 1495.258 kb on - strandat 1495.278 kb on - strandat 1495.441 kb on - strand, within CSW01_07045at 1495.521 kb on + strand, within CSW01_07045at 1495.521 kb on + strand, within CSW01_07045at 1495.543 kb on - strand, within CSW01_07045at 1495.545 kb on + strand, within CSW01_07045at 1495.546 kb on + strand, within CSW01_07045at 1495.548 kb on - strand, within CSW01_07045at 1495.604 kb on - strand, within CSW01_07045at 1495.692 kb on - strand, within CSW01_07045at 1495.712 kb on + strand, within CSW01_07045at 1495.720 kb on - strand, within CSW01_07045at 1495.743 kb on + strand, within CSW01_07045at 1495.751 kb on - strand, within CSW01_07045at 1495.751 kb on - strand, within CSW01_07045at 1495.839 kb on - strand, within CSW01_07045at 1496.007 kb on + strand, within CSW01_07045at 1496.007 kb on + strand, within CSW01_07045at 1496.015 kb on - strand, within CSW01_07045at 1496.080 kb on + strand, within CSW01_07045at 1496.096 kb on + strand, within CSW01_07045at 1496.104 kb on - strand, within CSW01_07045at 1496.104 kb on - strand, within CSW01_07045at 1496.104 kb on - strand, within CSW01_07045at 1496.154 kb on + strand, within CSW01_07045at 1496.162 kb on - strand, within CSW01_07045at 1496.164 kb on + strand, within CSW01_07045at 1496.164 kb on + strand, within CSW01_07045at 1496.283 kb on + strand, within CSW01_07045at 1496.311 kb on + strand, within CSW01_07045at 1496.319 kb on - strand, within CSW01_07045at 1496.412 kb on + strand, within CSW01_07045at 1496.455 kb on - strand, within CSW01_07045at 1496.502 kb on + strand, within CSW01_07045at 1496.502 kb on + strand, within CSW01_07045at 1496.502 kb on + strand, within CSW01_07045at 1496.510 kb on - strand, within CSW01_07045at 1496.513 kb on + strand, within CSW01_07045at 1496.676 kb on + strandat 1496.702 kb on - strandat 1496.783 kb on - strandat 1496.789 kb on - strandat 1496.897 kb on + strandat 1496.898 kb on - strandat 1496.970 kb on + strandat 1496.973 kb on - strandat 1496.976 kb on + strandat 1496.976 kb on + strandat 1496.993 kb on - strandat 1497.187 kb on + strand, within CSW01_07050at 1497.198 kb on + strand, within CSW01_07050at 1497.266 kb on + strand, within CSW01_07050at 1497.266 kb on + strand, within CSW01_07050at 1497.274 kb on - strand, within CSW01_07050at 1497.276 kb on + strand, within CSW01_07050at 1497.298 kb on + strand, within CSW01_07050at 1497.327 kb on - strand, within CSW01_07050at 1497.407 kb on - strand, within CSW01_07050at 1497.453 kb on + strand, within CSW01_07050at 1497.820 kb on + strand, within CSW01_07050at 1497.820 kb on + strand, within CSW01_07050at 1497.828 kb on - strand, within CSW01_07050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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1,494,326 + CSW01_07040 0.88 -0.3
1,494,326 + CSW01_07040 0.88 +1.6
1,494,326 + CSW01_07040 0.88 +0.2
1,494,329 + CSW01_07040 0.88 +0.2
1,494,337 - CSW01_07040 0.89 +0.1
1,494,439 + +0.4
1,494,493 + -1.1
1,494,501 - -0.8
1,494,501 - +0.0
1,494,517 - -0.6
1,494,529 - -0.5
1,494,542 - -0.2
1,494,580 + +0.1
1,494,581 + -0.2
1,494,589 - -0.4
1,494,728 + +0.7
1,494,731 - +0.5
1,494,867 - -0.5
1,494,868 - +0.2
1,494,879 - +0.6
1,494,939 + -0.2
1,494,947 - -0.5
1,494,947 - +0.6
1,494,947 - +0.3
1,495,025 + -0.4
1,495,025 + +0.4
1,495,025 + +0.2
1,495,072 + +0.9
1,495,095 - +1.0
1,495,097 + +0.2
1,495,196 + +0.6
1,495,196 + +0.8
1,495,196 + -0.4
1,495,204 - -0.4
1,495,256 + +0.6
1,495,258 - -0.3
1,495,278 - -0.5
1,495,441 - CSW01_07045 0.17 -0.3
1,495,521 + CSW01_07045 0.22 +0.0
1,495,521 + CSW01_07045 0.22 +0.3
1,495,543 - CSW01_07045 0.23 -1.1
1,495,545 + CSW01_07045 0.23 +0.3
1,495,546 + CSW01_07045 0.23 +1.2
1,495,548 - CSW01_07045 0.24 -0.7
1,495,604 - CSW01_07045 0.27 +0.0
1,495,692 - CSW01_07045 0.32 +0.6
1,495,712 + CSW01_07045 0.33 -0.2
1,495,720 - CSW01_07045 0.34 +1.2
1,495,743 + CSW01_07045 0.35 +0.5
1,495,751 - CSW01_07045 0.36 -0.6
1,495,751 - CSW01_07045 0.36 +0.5
1,495,839 - CSW01_07045 0.41 -0.4
1,496,007 + CSW01_07045 0.51 +0.0
1,496,007 + CSW01_07045 0.51 +1.0
1,496,015 - CSW01_07045 0.51 +1.8
1,496,080 + CSW01_07045 0.55 +0.6
1,496,096 + CSW01_07045 0.56 +0.2
1,496,104 - CSW01_07045 0.56 +1.1
1,496,104 - CSW01_07045 0.56 +0.9
1,496,104 - CSW01_07045 0.56 +0.5
1,496,154 + CSW01_07045 0.59 +0.6
1,496,162 - CSW01_07045 0.60 -0.2
1,496,164 + CSW01_07045 0.60 -0.5
1,496,164 + CSW01_07045 0.60 -0.7
1,496,283 + CSW01_07045 0.67 -3.7
1,496,311 + CSW01_07045 0.69 -0.3
1,496,319 - CSW01_07045 0.69 +1.9
1,496,412 + CSW01_07045 0.75 +0.4
1,496,455 - CSW01_07045 0.77 +1.2
1,496,502 + CSW01_07045 0.80 +0.1
1,496,502 + CSW01_07045 0.80 +0.2
1,496,502 + CSW01_07045 0.80 +0.4
1,496,510 - CSW01_07045 0.80 -0.4
1,496,513 + CSW01_07045 0.81 -0.6
1,496,676 + -0.8
1,496,702 - +0.2
1,496,783 - -0.5
1,496,789 - -0.8
1,496,897 + -0.2
1,496,898 - -0.1
1,496,970 + -0.1
1,496,973 - +0.2
1,496,976 + -1.2
1,496,976 + +1.3
1,496,993 - -2.2
1,497,187 + CSW01_07050 0.20 +0.8
1,497,198 + CSW01_07050 0.21 +1.1
1,497,266 + CSW01_07050 0.26 +0.9
1,497,266 + CSW01_07050 0.26 -0.9
1,497,274 - CSW01_07050 0.27 -0.1
1,497,276 + CSW01_07050 0.27 -1.5
1,497,298 + CSW01_07050 0.29 -0.1
1,497,327 - CSW01_07050 0.31 -0.7
1,497,407 - CSW01_07050 0.37 +0.7
1,497,453 + CSW01_07050 0.41 +0.0
1,497,820 + CSW01_07050 0.68 -1.1
1,497,820 + CSW01_07050 0.68 -0.0
1,497,828 - CSW01_07050 0.69 +0.2

Or see this region's nucleotide sequence