Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06710

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_18HR_ZN21A
1,412,000	+				-0.2
1,412,000	+				+0.1
1,412,171	+		CSW01_06705	0.36	+0.4
1,412,171	+		CSW01_06705	0.36	+1.4
1,412,171	+		CSW01_06705	0.36	+0.3
1,412,179	-		CSW01_06705	0.37	+0.5
1,412,225	+		CSW01_06705	0.44	-1.0
1,412,237	+		CSW01_06705	0.46	-0.3
1,412,237	+		CSW01_06705	0.46	-0.5
1,412,237	+		CSW01_06705	0.46	+0.3
1,412,237	+		CSW01_06705	0.46	+0.1
1,412,243	+		CSW01_06705	0.47	-0.3
1,412,245	-		CSW01_06705	0.47	-0.1
1,412,275	+		CSW01_06705	0.52	-1.1
1,412,275	+		CSW01_06705	0.52	-0.2
1,412,278	-		CSW01_06705	0.52	-0.0
1,412,283	-		CSW01_06705	0.53	+0.6
1,412,283	-		CSW01_06705	0.53	-0.1
1,412,283	-		CSW01_06705	0.53	+0.8
1,412,288	-		CSW01_06705	0.54	+0.4
1,412,288	-		CSW01_06705	0.54	+1.6
1,412,288	-		CSW01_06705	0.54	-1.2
1,412,307	+		CSW01_06705	0.57	+0.9
1,412,315	-		CSW01_06705	0.58	-0.8
1,412,320	-		CSW01_06705	0.59	-0.1
1,412,340	+		CSW01_06705	0.62	+0.0
1,412,344	-		CSW01_06705	0.63	-0.4
1,412,349	-		CSW01_06705	0.63	+0.4
1,412,376	+		CSW01_06705	0.68	+0.3
1,412,376	+		CSW01_06705	0.68	+0.4
1,412,376	+		CSW01_06705	0.68	-0.5
1,412,384	-		CSW01_06705	0.69	-0.2
1,412,408	+		CSW01_06705	0.73	+0.8
1,412,412	-		CSW01_06705	0.73	+0.5
1,412,416	-		CSW01_06705	0.74	+0.5
1,412,423	-		CSW01_06705	0.75	+1.2
1,412,443	+		CSW01_06705	0.78	-0.4
1,412,443	+		CSW01_06705	0.78	+0.0
1,412,450	-		CSW01_06705	0.79	-0.4
1,412,494	-		CSW01_06705	0.86	+0.0
1,412,527	+				-0.2
1,412,527	+				-0.3
1,412,671	+				+0.0
1,412,673	-				-1.2
1,412,681	+				+0.6
1,412,689	-				+0.2
1,412,694	+				+0.3
1,412,702	+				-0.0
1,412,702	+				+0.2
1,412,702	+				-0.4
1,412,702	+				+0.3
1,412,710	-				-1.3
1,412,710	-				-0.1
1,412,710	-				+0.5
1,412,710	-				-0.5
1,412,712	-				-0.2
1,412,712	-				-0.2
1,412,746	+				-0.0
1,412,755	-				-0.8
1,412,768	-				-0.1
1,412,770	+				+0.0
1,412,814	-				-0.8
1,412,828	+				-0.2
1,412,828	+				+0.4
1,412,828	+				-0.3
1,412,828	+				-0.1
1,412,828	+				+0.6
1,412,828	+				-0.2
1,412,828	+				+0.3
1,412,828	+				+1.2
1,412,828	+				+0.7
1,412,828	+				-0.8
1,412,828	+				+2.3
1,412,828	+				+0.5
1,412,828	+				-0.1
1,412,828	+				-0.2
1,412,828	+				+0.3
1,412,828	+				-0.9
1,412,828	+				+0.1
1,412,828	+				-0.1
1,412,828	+				-0.5
1,412,828	+				+0.3
1,412,829	-				-0.2
1,412,833	+				+0.3
1,412,836	-				+0.0
1,412,836	-				+0.3
1,412,836	-				-0.8
1,412,836	-				+0.8
1,412,836	-				-0.1
1,412,836	-				+0.2
1,412,836	-				+1.4
1,412,836	-				-0.5
1,412,836	-				+0.3
1,412,836	-				+0.2
1,412,836	-				+0.7
1,412,836	-				-0.5
1,412,838	+				+0.0
1,412,838	+				+0.3
1,412,838	+				-0.2
1,412,838	+				+0.7
1,412,838	+				+0.4
1,412,838	+				+1.2
1,412,838	+				+1.2
1,412,838	+				+0.2
1,412,838	+				-0.1
1,412,838	+				+0.0
1,412,838	+				-0.7
1,412,838	+				-0.8
1,412,838	+				-1.6
1,412,838	+				+0.3
1,412,838	+				+0.2
1,412,838	+				+0.1
1,412,846	-				+0.9
1,412,846	-				+0.7
1,412,846	-				+0.2
1,412,846	-				-0.6
1,412,846	-				-0.0
1,412,846	-				+1.0
1,412,846	-				-0.2
1,412,846	-				-0.4
1,412,846	-				-0.6
1,412,846	-				-0.2
1,412,846	-				-0.8
1,412,846	-				-0.3
1,412,846	-				+0.7
1,412,848	-				-1.0
1,412,853	+				+0.3
1,412,853	+				-0.9
1,412,855	+				+2.6
1,412,855	+				+0.0
1,412,855	+				+1.6
1,412,855	+				-0.0
1,412,855	+				+0.2
1,412,855	+				+0.2
1,412,855	+				+0.0
1,412,855	+				+0.3
1,412,861	-				+0.9
1,412,861	-				+0.2
1,412,861	-				+0.5
1,412,863	-				+1.2
1,412,863	-				-0.2
1,412,863	-				+0.0
1,412,865	+				+0.4
1,412,907	-				-0.3
1,412,919	-				-0.1
1,412,944	+				+0.0
1,412,944	+				+0.0
1,412,952	-				-1.1
1,412,980	+				-0.0
1,412,980	+				+0.5
1,412,982	+				+0.0
1,412,982	+				-0.1
1,412,982	+				+0.1
1,412,990	-		CSW01_06710	0.11	+0.3
1,412,990	-		CSW01_06710	0.11	+0.4
1,412,994	+		CSW01_06710	0.11	-0.5
1,412,994	+		CSW01_06710	0.11	-0.3
1,413,002	-		CSW01_06710	0.12	-0.2
1,413,002	-		CSW01_06710	0.12	-0.3
1,413,015	+		CSW01_06710	0.14	-0.5
1,413,015	+		CSW01_06710	0.14	+0.2
1,413,015	+		CSW01_06710	0.14	-0.1
1,413,015	+		CSW01_06710	0.14	+0.3
1,413,023	-		CSW01_06710	0.14	+0.0
1,413,023	-		CSW01_06710	0.14	-0.8
1,413,023	-		CSW01_06710	0.14	+0.2
1,413,023	-		CSW01_06710	0.14	-0.1
1,413,023	-		CSW01_06710	0.14	-0.5
1,413,104	-		CSW01_06710	0.24	+0.5
1,413,153	-		CSW01_06710	0.30	-0.1
1,413,162	+		CSW01_06710	0.31	+1.9
1,413,162	+		CSW01_06710	0.31	+0.7
1,413,162	+		CSW01_06710	0.31	+1.7
1,413,170	-		CSW01_06710	0.32	+0.4
1,413,172	+		CSW01_06710	0.32	+0.1
1,413,172	+		CSW01_06710	0.32	+0.9
1,413,172	+		CSW01_06710	0.32	+0.7
1,413,172	+		CSW01_06710	0.32	+0.2
1,413,172	+		CSW01_06710	0.32	+0.9
1,413,172	+		CSW01_06710	0.32	+0.2
1,413,179	-		CSW01_06710	0.33	+0.2
1,413,180	-		CSW01_06710	0.33	-2.0
1,413,180	-		CSW01_06710	0.33	-0.4
1,413,185	+		CSW01_06710	0.34	+0.4
1,413,193	-		CSW01_06710	0.35	-0.5
1,413,200	-		CSW01_06710	0.36	-0.7
1,413,230	+		CSW01_06710	0.39	+0.2
1,413,238	-		CSW01_06710	0.40	+0.4
1,413,244	-		CSW01_06710	0.41	-0.2
1,413,244	-		CSW01_06710	0.41	-0.4
1,413,244	-		CSW01_06710	0.41	-0.5
1,413,244	-		CSW01_06710	0.41	+0.5
1,413,244	-		CSW01_06710	0.41	-0.5
1,413,244	-		CSW01_06710	0.41	+0.0
1,413,249	-		CSW01_06710	0.42	+0.4
1,413,331	+		CSW01_06710	0.52	+0.6
1,413,339	-		CSW01_06710	0.53	+0.5
1,413,339	-		CSW01_06710	0.53	+1.7
1,413,349	-		CSW01_06710	0.54	+0.9
1,413,393	+		CSW01_06710	0.59	-0.4
1,413,396	-		CSW01_06710	0.60	-0.2
1,413,401	-		CSW01_06710	0.60	+0.3
1,413,401	-		CSW01_06710	0.60	-0.2
1,413,406	+		CSW01_06710	0.61	-0.5
1,413,406	+		CSW01_06710	0.61	-0.7
1,413,486	+		CSW01_06710	0.70	+0.2
1,413,486	+		CSW01_06710	0.70	-0.5
1,413,494	-		CSW01_06710	0.71	+0.4
1,413,494	-		CSW01_06710	0.71	+0.0
1,413,518	+		CSW01_06710	0.74	-1.2
1,413,553	+		CSW01_06710	0.79	+1.1
1,413,572	+		CSW01_06710	0.81	+0.1
1,413,586	-		CSW01_06710	0.82	-0.2
1,413,597	-		CSW01_06710	0.84	+0.6
1,413,634	+		CSW01_06710	0.88	+0.2
1,413,634	+		CSW01_06710	0.88	+0.5
1,413,691	-				+0.6
1,413,693	-				+0.3
1,413,804	+				+0.2
1,413,807	-				-0.1
1,413,874	+				+1.2
1,413,874	+				+0.2
1,413,874	+				-0.7
1,413,874	+				+0.3
1,413,882	-				-1.1
1,413,882	-				+1.1
1,413,932	+				+0.2
1,413,942	+				+0.5
1,413,950	-				+0.2
1,413,950	-				+0.4
1,413,977	+				+0.1
1,413,985	-				-0.8
1,414,041	-		CSW01_06715	0.10	-1.0
1,414,077	-		CSW01_06715	0.13	+1.3
1,414,084	+		CSW01_06715	0.13	+1.4
1,414,084	+		CSW01_06715	0.13	-0.1
1,414,172	-		CSW01_06715	0.19	+0.9
1,414,172	-		CSW01_06715	0.19	-1.3
1,414,219	+		CSW01_06715	0.22	+0.1
1,414,225	-		CSW01_06715	0.22	+0.6
1,414,227	-		CSW01_06715	0.23	-0.4
1,414,227	-		CSW01_06715	0.23	+0.7
1,414,287	+		CSW01_06715	0.27	-1.1
1,414,313	+		CSW01_06715	0.28	+0.4
1,414,396	+		CSW01_06715	0.34	-0.4
1,414,404	-		CSW01_06715	0.34	-0.2
1,414,405	-		CSW01_06715	0.34	+0.2
1,414,504	-		CSW01_06715	0.41	+0.1
1,414,609	-		CSW01_06715	0.48	-0.1
1,414,609	-		CSW01_06715	0.48	-0.0
1,414,624	+		CSW01_06715	0.49	-0.6
1,414,624	+		CSW01_06715	0.49	-0.3
1,414,624	+		CSW01_06715	0.49	-0.2
1,414,624	+		CSW01_06715	0.49	+0.2
1,414,645	-		CSW01_06715	0.50	+0.4