Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05140

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05130 and CSW01_05135 are separated by 48 nucleotidesCSW01_05135 and CSW01_05140 are separated by 158 nucleotidesCSW01_05140 and CSW01_05145 are separated by 40 nucleotidesCSW01_05145 and CSW01_05150 are separated by 26 nucleotides CSW01_05130: CSW01_05130 - flagellar protein MotY, at 1,077,109 to 1,077,993 _05130 CSW01_05135: CSW01_05135 - DUF2753 domain-containing protein, at 1,078,042 to 1,078,482 _05135 CSW01_05140: CSW01_05140 - lactoylglutathione lyase, at 1,078,641 to 1,079,057 _05140 CSW01_05145: CSW01_05145 - endonuclease III, at 1,079,098 to 1,079,739 _05145 CSW01_05150: CSW01_05150 - electron transport complex subunit E, at 1,079,766 to 1,080,458 _05150 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -1 0 1 2 3at 1077.643 kb on - strand, within CSW01_05130at 1077.670 kb on + strand, within CSW01_05130at 1077.683 kb on + strand, within CSW01_05130at 1077.691 kb on - strand, within CSW01_05130at 1077.889 kb on + strand, within CSW01_05130at 1077.889 kb on + strand, within CSW01_05130at 1077.897 kb on - strand, within CSW01_05130at 1078.027 kb on + strandat 1078.035 kb on - strandat 1078.087 kb on + strand, within CSW01_05135at 1078.122 kb on - strand, within CSW01_05135at 1078.126 kb on - strand, within CSW01_05135at 1078.218 kb on + strand, within CSW01_05135at 1078.218 kb on + strand, within CSW01_05135at 1078.378 kb on + strand, within CSW01_05135at 1078.398 kb on + strand, within CSW01_05135at 1078.406 kb on - strand, within CSW01_05135at 1078.406 kb on - strand, within CSW01_05135at 1078.423 kb on + strand, within CSW01_05135at 1078.467 kb on + strandat 1078.496 kb on - strandat 1078.646 kb on + strandat 1078.742 kb on - strand, within CSW01_05140at 1078.751 kb on + strand, within CSW01_05140at 1078.759 kb on - strand, within CSW01_05140at 1078.777 kb on + strand, within CSW01_05140at 1078.869 kb on + strand, within CSW01_05140at 1078.975 kb on - strand, within CSW01_05140at 1079.053 kb on + strandat 1079.108 kb on + strandat 1079.175 kb on + strand, within CSW01_05145at 1079.232 kb on + strand, within CSW01_05145at 1079.243 kb on + strand, within CSW01_05145at 1079.254 kb on + strand, within CSW01_05145at 1079.301 kb on + strand, within CSW01_05145at 1079.320 kb on - strand, within CSW01_05145at 1079.355 kb on - strand, within CSW01_05145at 1079.390 kb on + strand, within CSW01_05145at 1079.435 kb on + strand, within CSW01_05145at 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.775 kb on + strandat 1079.790 kb on + strandat 1079.790 kb on + strandat 1079.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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1,077,643 - CSW01_05130 0.60 +0.5
1,077,670 + CSW01_05130 0.63 +0.6
1,077,683 + CSW01_05130 0.65 +1.1
1,077,691 - CSW01_05130 0.66 -0.2
1,077,889 + CSW01_05130 0.88 +0.9
1,077,889 + CSW01_05130 0.88 +0.6
1,077,897 - CSW01_05130 0.89 +1.1
1,078,027 + -0.7
1,078,035 - +0.6
1,078,087 + CSW01_05135 0.10 -0.8
1,078,122 - CSW01_05135 0.18 +0.5
1,078,126 - CSW01_05135 0.19 +0.2
1,078,218 + CSW01_05135 0.40 -0.8
1,078,218 + CSW01_05135 0.40 -0.4
1,078,378 + CSW01_05135 0.76 +0.8
1,078,398 + CSW01_05135 0.81 -0.2
1,078,406 - CSW01_05135 0.83 +0.0
1,078,406 - CSW01_05135 0.83 +0.6
1,078,423 + CSW01_05135 0.86 -0.1
1,078,467 + +0.8
1,078,496 - +0.6
1,078,646 + +0.3
1,078,742 - CSW01_05140 0.24 -1.1
1,078,751 + CSW01_05140 0.26 -1.2
1,078,759 - CSW01_05140 0.28 -1.0
1,078,777 + CSW01_05140 0.33 +0.5
1,078,869 + CSW01_05140 0.55 +1.2
1,078,975 - CSW01_05140 0.80 -0.2
1,079,053 + +0.0
1,079,108 + -0.0
1,079,175 + CSW01_05145 0.12 -0.2
1,079,232 + CSW01_05145 0.21 +0.3
1,079,243 + CSW01_05145 0.23 -1.4
1,079,254 + CSW01_05145 0.24 +0.9
1,079,301 + CSW01_05145 0.32 +0.4
1,079,320 - CSW01_05145 0.35 -0.4
1,079,355 - CSW01_05145 0.40 -0.4
1,079,390 + CSW01_05145 0.45 +0.3
1,079,435 + CSW01_05145 0.52 -0.7
1,079,772 - +2.9
1,079,772 - +0.1
1,079,772 - +1.0
1,079,775 + +0.0
1,079,790 + +0.7
1,079,790 + -0.7
1,079,798 - -0.2

Or see this region's nucleotide sequence