Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04005

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04000 and CSW01_04005 are separated by 100 nucleotidesCSW01_04005 and CSW01_04010 are separated by 10 nucleotides CSW01_04000: CSW01_04000 - isochorismatase, at 824,944 to 825,825 _04000 CSW01_04005: CSW01_04005 - 2,3-dihydroxybenzoate-AMP ligase, at 825,926 to 827,557 _04005 CSW01_04010: CSW01_04010 - vibriobactin biosynthesis isochorismate synthase, at 827,568 to 828,755 _04010 Position (kb) 825 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 824.972 kb on - strandat 825.052 kb on + strand, within CSW01_04000at 825.121 kb on - strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.131 kb on - strand, within CSW01_04000at 825.131 kb on - strand, within CSW01_04000at 825.159 kb on + strand, within CSW01_04000at 825.159 kb on + strand, within CSW01_04000at 825.167 kb on - strand, within CSW01_04000at 825.167 kb on - strand, within CSW01_04000at 825.202 kb on + strand, within CSW01_04000at 825.289 kb on - strand, within CSW01_04000at 825.350 kb on - strand, within CSW01_04000at 825.350 kb on - strand, within CSW01_04000at 825.390 kb on + strand, within CSW01_04000at 825.498 kb on + strand, within CSW01_04000at 825.507 kb on - strand, within CSW01_04000at 825.569 kb on + strand, within CSW01_04000at 825.569 kb on + strand, within CSW01_04000at 825.576 kb on + strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.583 kb on + strand, within CSW01_04000at 825.583 kb on + strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.635 kb on - strand, within CSW01_04000at 825.665 kb on - strand, within CSW01_04000at 825.810 kb on + strandat 825.810 kb on + strandat 825.818 kb on - strandat 825.818 kb on - strandat 825.818 kb on - strandat 825.818 kb on - strandat 826.007 kb on - strandat 826.089 kb on + strandat 826.102 kb on + strand, within CSW01_04005at 826.102 kb on + strand, within CSW01_04005at 826.138 kb on + strand, within CSW01_04005at 826.146 kb on - strand, within CSW01_04005at 826.146 kb on - strand, within CSW01_04005at 826.285 kb on - strand, within CSW01_04005at 826.295 kb on + strand, within CSW01_04005at 826.340 kb on - strand, within CSW01_04005at 826.352 kb on + strand, within CSW01_04005at 826.360 kb on - strand, within CSW01_04005at 826.362 kb on + strand, within CSW01_04005at 826.370 kb on - strand, within CSW01_04005at 826.390 kb on + strand, within CSW01_04005at 826.398 kb on - strand, within CSW01_04005at 826.431 kb on + strand, within CSW01_04005at 826.473 kb on + strand, within CSW01_04005at 826.481 kb on - strand, within CSW01_04005at 826.492 kb on - strand, within CSW01_04005at 826.504 kb on + strand, within CSW01_04005at 826.516 kb on + strand, within CSW01_04005at 826.541 kb on + strand, within CSW01_04005at 826.549 kb on - strand, within CSW01_04005at 826.584 kb on + strand, within CSW01_04005at 826.639 kb on - strand, within CSW01_04005at 826.657 kb on + strand, within CSW01_04005at 826.686 kb on + strand, within CSW01_04005at 826.691 kb on + strand, within CSW01_04005at 826.694 kb on - strand, within CSW01_04005at 826.699 kb on - strand, within CSW01_04005at 826.771 kb on + strand, within CSW01_04005at 826.783 kb on + strand, within CSW01_04005at 826.849 kb on - strand, within CSW01_04005at 826.849 kb on - strand, within CSW01_04005at 826.867 kb on + strand, within CSW01_04005at 826.959 kb on - strand, within CSW01_04005at 827.042 kb on - strand, within CSW01_04005at 827.092 kb on + strand, within CSW01_04005at 827.102 kb on + strand, within CSW01_04005at 827.102 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.107 kb on + strand, within CSW01_04005at 827.143 kb on - strand, within CSW01_04005at 827.149 kb on + strand, within CSW01_04005at 827.184 kb on + strand, within CSW01_04005at 827.192 kb on - strand, within CSW01_04005at 827.192 kb on - strand, within CSW01_04005at 827.315 kb on + strand, within CSW01_04005at 827.334 kb on + strand, within CSW01_04005at 827.344 kb on + strand, within CSW01_04005at 827.347 kb on - strand, within CSW01_04005at 827.374 kb on + strand, within CSW01_04005at 827.382 kb on - strand, within CSW01_04005at 827.382 kb on - strand, within CSW01_04005at 827.413 kb on + strandat 827.426 kb on - strandat 827.436 kb on - strandat 827.445 kb on - strandat 827.449 kb on + strandat 827.457 kb on - strandat 827.480 kb on + strandat 827.480 kb on + strandat 827.582 kb on - strandat 827.584 kb on + strandat 827.591 kb on + strandat 827.591 kb on + strandat 827.591 kb on + strandat 827.591 kb on + strandat 827.599 kb on - strandat 827.599 kb on - strandat 827.599 kb on - strandat 827.599 kb on - strandat 827.639 kb on + strandat 827.722 kb on - strand, within CSW01_04010at 827.746 kb on + strand, within CSW01_04010at 827.746 kb on + strand, within CSW01_04010at 827.855 kb on + strand, within CSW01_04010at 827.868 kb on - strand, within CSW01_04010at 827.893 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.900 kb on + strand, within CSW01_04010at 827.901 kb on - strand, within CSW01_04010at 827.930 kb on + strand, within CSW01_04010at 827.930 kb on + strand, within CSW01_04010at 827.932 kb on + strand, within CSW01_04010at 827.938 kb on - strand, within CSW01_04010at 827.940 kb on + strand, within CSW01_04010at 827.940 kb on - strand, within CSW01_04010at 827.948 kb on - strand, within CSW01_04010at 827.948 kb on - strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.975 kb on + strand, within CSW01_04010at 827.993 kb on - strand, within CSW01_04010at 828.072 kb on - strand, within CSW01_04010at 828.072 kb on - strand, within CSW01_04010at 828.074 kb on - strand, within CSW01_04010at 828.145 kb on - strand, within CSW01_04010at 828.168 kb on + strand, within CSW01_04010at 828.176 kb on + strand, within CSW01_04010at 828.217 kb on - strand, within CSW01_04010at 828.242 kb on + strand, within CSW01_04010at 828.270 kb on + strand, within CSW01_04010at 828.278 kb on + strand, within CSW01_04010at 828.285 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.325 kb on + strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.333 kb on - strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.335 kb on + strand, within CSW01_04010at 828.343 kb on - strand, within CSW01_04010at 828.343 kb on - strand, within CSW01_04010at 828.365 kb on + strand, within CSW01_04010at 828.365 kb on + strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.373 kb on - strand, within CSW01_04010at 828.444 kb on + strand, within CSW01_04010at 828.444 kb on + strand, within CSW01_04010at 828.452 kb on - strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.467 kb on + strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.475 kb on - strand, within CSW01_04010at 828.523 kb on + strand, within CSW01_04010at 828.531 kb on - strand, within CSW01_04010at 828.541 kb on - strand, within CSW01_04010at 828.541 kb on - strand, within CSW01_04010

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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824,972 - +0.2
825,052 + CSW01_04000 0.12 -0.1
825,121 - CSW01_04000 0.20 +0.6
825,123 + CSW01_04000 0.20 +0.0
825,123 + CSW01_04000 0.20 +0.5
825,123 + CSW01_04000 0.20 -0.5
825,123 + CSW01_04000 0.20 +0.3
825,131 - CSW01_04000 0.21 +1.2
825,131 - CSW01_04000 0.21 -0.5
825,159 + CSW01_04000 0.24 +1.1
825,159 + CSW01_04000 0.24 +0.4
825,167 - CSW01_04000 0.25 +0.2
825,167 - CSW01_04000 0.25 +0.4
825,202 + CSW01_04000 0.29 -0.4
825,289 - CSW01_04000 0.39 +0.1
825,350 - CSW01_04000 0.46 -0.0
825,350 - CSW01_04000 0.46 +0.1
825,390 + CSW01_04000 0.51 -0.5
825,498 + CSW01_04000 0.63 +0.5
825,507 - CSW01_04000 0.64 -0.4
825,569 + CSW01_04000 0.71 +0.8
825,569 + CSW01_04000 0.71 -0.2
825,576 + CSW01_04000 0.72 +0.3
825,577 - CSW01_04000 0.72 -0.3
825,577 - CSW01_04000 0.72 -0.0
825,577 - CSW01_04000 0.72 -0.2
825,583 + CSW01_04000 0.72 -0.1
825,583 + CSW01_04000 0.72 -0.0
825,591 - CSW01_04000 0.73 +0.1
825,591 - CSW01_04000 0.73 +1.0
825,591 - CSW01_04000 0.73 +0.1
825,635 - CSW01_04000 0.78 -0.1
825,665 - CSW01_04000 0.82 -0.2
825,810 + +0.7
825,810 + -0.3
825,818 - +0.2
825,818 - +0.0
825,818 - +1.1
825,818 - -0.4
826,007 - +1.1
826,089 + +0.4
826,102 + CSW01_04005 0.11 +0.2
826,102 + CSW01_04005 0.11 +0.6
826,138 + CSW01_04005 0.13 +0.5
826,146 - CSW01_04005 0.13 +0.5
826,146 - CSW01_04005 0.13 +0.6
826,285 - CSW01_04005 0.22 +0.2
826,295 + CSW01_04005 0.23 -0.8
826,340 - CSW01_04005 0.25 -0.4
826,352 + CSW01_04005 0.26 -0.3
826,360 - CSW01_04005 0.27 -0.2
826,362 + CSW01_04005 0.27 +0.6
826,370 - CSW01_04005 0.27 -0.2
826,390 + CSW01_04005 0.28 +0.1
826,398 - CSW01_04005 0.29 +1.2
826,431 + CSW01_04005 0.31 +1.0
826,473 + CSW01_04005 0.34 +1.0
826,481 - CSW01_04005 0.34 +0.4
826,492 - CSW01_04005 0.35 +0.5
826,504 + CSW01_04005 0.35 +0.9
826,516 + CSW01_04005 0.36 +0.2
826,541 + CSW01_04005 0.38 -0.3
826,549 - CSW01_04005 0.38 +0.1
826,584 + CSW01_04005 0.40 -0.8
826,639 - CSW01_04005 0.44 +0.4
826,657 + CSW01_04005 0.45 -0.1
826,686 + CSW01_04005 0.47 +0.4
826,691 + CSW01_04005 0.47 +0.4
826,694 - CSW01_04005 0.47 -0.1
826,699 - CSW01_04005 0.47 -0.1
826,771 + CSW01_04005 0.52 -0.0
826,783 + CSW01_04005 0.53 +1.0
826,849 - CSW01_04005 0.57 +0.9
826,849 - CSW01_04005 0.57 +0.9
826,867 + CSW01_04005 0.58 +0.4
826,959 - CSW01_04005 0.63 +0.2
827,042 - CSW01_04005 0.68 +0.8
827,092 + CSW01_04005 0.71 +1.9
827,102 + CSW01_04005 0.72 +1.0
827,102 + CSW01_04005 0.72 +0.1
827,107 + CSW01_04005 0.72 +1.5
827,107 + CSW01_04005 0.72 +0.6
827,107 + CSW01_04005 0.72 -0.5
827,107 + CSW01_04005 0.72 +0.8
827,143 - CSW01_04005 0.75 +0.8
827,149 + CSW01_04005 0.75 +0.3
827,184 + CSW01_04005 0.77 -0.2
827,192 - CSW01_04005 0.78 +0.1
827,192 - CSW01_04005 0.78 +0.5
827,315 + CSW01_04005 0.85 +0.3
827,334 + CSW01_04005 0.86 +0.3
827,344 + CSW01_04005 0.87 -0.1
827,347 - CSW01_04005 0.87 -1.1
827,374 + CSW01_04005 0.89 +0.6
827,382 - CSW01_04005 0.89 -0.9
827,382 - CSW01_04005 0.89 +0.3
827,413 + -0.8
827,426 - -0.2
827,436 - -0.1
827,445 - +0.1
827,449 + +0.2
827,457 - +0.1
827,480 + -0.6
827,480 + -0.4
827,582 - +0.2
827,584 + +0.6
827,591 + +0.1
827,591 + -0.2
827,591 + -0.1
827,591 + +0.3
827,599 - -0.4
827,599 - +2.7
827,599 - +0.2
827,599 - +0.1
827,639 + +0.3
827,722 - CSW01_04010 0.13 -0.7
827,746 + CSW01_04010 0.15 -0.6
827,746 + CSW01_04010 0.15 -0.2
827,855 + CSW01_04010 0.24 -0.8
827,868 - CSW01_04010 0.25 +0.7
827,893 + CSW01_04010 0.27 -1.1
827,900 + CSW01_04010 0.28 +0.5
827,900 + CSW01_04010 0.28 +0.9
827,900 + CSW01_04010 0.28 -0.8
827,900 + CSW01_04010 0.28 +1.8
827,901 - CSW01_04010 0.28 -0.5
827,930 + CSW01_04010 0.30 +2.1
827,930 + CSW01_04010 0.30 +0.5
827,932 + CSW01_04010 0.31 +0.9
827,938 - CSW01_04010 0.31 -0.1
827,940 + CSW01_04010 0.31 +0.3
827,940 - CSW01_04010 0.31 +0.9
827,948 - CSW01_04010 0.32 +0.5
827,948 - CSW01_04010 0.32 -0.9
827,975 + CSW01_04010 0.34 +0.3
827,975 + CSW01_04010 0.34 +0.4
827,975 + CSW01_04010 0.34 +0.1
827,993 - CSW01_04010 0.36 +1.1
828,072 - CSW01_04010 0.42 -1.2
828,072 - CSW01_04010 0.42 +0.5
828,074 - CSW01_04010 0.43 +0.4
828,145 - CSW01_04010 0.49 +1.2
828,168 + CSW01_04010 0.51 +0.6
828,176 + CSW01_04010 0.51 +0.4
828,217 - CSW01_04010 0.55 +0.2
828,242 + CSW01_04010 0.57 +1.5
828,270 + CSW01_04010 0.59 +0.1
828,278 + CSW01_04010 0.60 +0.4
828,285 + CSW01_04010 0.60 +1.5
828,325 + CSW01_04010 0.64 +0.8
828,325 + CSW01_04010 0.64 +0.1
828,325 + CSW01_04010 0.64 +0.3
828,325 + CSW01_04010 0.64 +0.5
828,325 + CSW01_04010 0.64 +1.2
828,325 + CSW01_04010 0.64 -2.8
828,325 + CSW01_04010 0.64 +0.5
828,325 + CSW01_04010 0.64 -1.2
828,325 + CSW01_04010 0.64 +0.5
828,325 + CSW01_04010 0.64 +0.1
828,325 + CSW01_04010 0.64 +0.7
828,325 + CSW01_04010 0.64 +0.8
828,325 + CSW01_04010 0.64 -0.1
828,325 + CSW01_04010 0.64 +0.2
828,333 - CSW01_04010 0.64 +0.3
828,333 - CSW01_04010 0.64 +0.1
828,333 - CSW01_04010 0.64 +0.8
828,333 - CSW01_04010 0.64 +0.1
828,333 - CSW01_04010 0.64 -0.3
828,333 - CSW01_04010 0.64 -0.3
828,333 - CSW01_04010 0.64 -0.0
828,333 - CSW01_04010 0.64 -0.7
828,333 - CSW01_04010 0.64 +0.3
828,333 - CSW01_04010 0.64 +0.5
828,335 + CSW01_04010 0.65 +0.4
828,335 + CSW01_04010 0.65 +0.4
828,335 + CSW01_04010 0.65 +0.2
828,335 + CSW01_04010 0.65 +1.3
828,335 + CSW01_04010 0.65 +0.4
828,343 - CSW01_04010 0.65 +1.5
828,343 - CSW01_04010 0.65 +0.5
828,365 + CSW01_04010 0.67 +0.5
828,365 + CSW01_04010 0.67 +0.2
828,373 - CSW01_04010 0.68 -0.5
828,373 - CSW01_04010 0.68 +0.5
828,373 - CSW01_04010 0.68 -0.4
828,444 + CSW01_04010 0.74 +1.1
828,444 + CSW01_04010 0.74 +0.1
828,452 - CSW01_04010 0.74 +0.7
828,467 + CSW01_04010 0.76 -0.3
828,467 + CSW01_04010 0.76 +1.0
828,467 + CSW01_04010 0.76 +0.0
828,467 + CSW01_04010 0.76 -0.6
828,467 + CSW01_04010 0.76 +0.8
828,467 + CSW01_04010 0.76 +0.1
828,467 + CSW01_04010 0.76 +0.5
828,467 + CSW01_04010 0.76 +0.3
828,467 + CSW01_04010 0.76 +1.7
828,467 + CSW01_04010 0.76 -0.1
828,467 + CSW01_04010 0.76 -0.8
828,467 + CSW01_04010 0.76 -0.3
828,467 + CSW01_04010 0.76 +1.0
828,467 + CSW01_04010 0.76 +0.4
828,467 + CSW01_04010 0.76 +0.8
828,467 + CSW01_04010 0.76 +0.7
828,467 + CSW01_04010 0.76 +0.1
828,475 - CSW01_04010 0.76 +0.9
828,475 - CSW01_04010 0.76 +0.1
828,475 - CSW01_04010 0.76 -0.6
828,475 - CSW01_04010 0.76 -0.0
828,475 - CSW01_04010 0.76 -0.5
828,475 - CSW01_04010 0.76 +1.6
828,475 - CSW01_04010 0.76 -0.5
828,475 - CSW01_04010 0.76 -0.1
828,475 - CSW01_04010 0.76 +0.8
828,475 - CSW01_04010 0.76 -0.1
828,475 - CSW01_04010 0.76 -0.3
828,475 - CSW01_04010 0.76 -0.4
828,523 + CSW01_04010 0.80 -0.0
828,531 - CSW01_04010 0.81 +0.1
828,541 - CSW01_04010 0.82 -0.5
828,541 - CSW01_04010 0.82 +0.6

Or see this region's nucleotide sequence