Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03780 and CSW01_03785 are separated by 198 nucleotides CSW01_03785 and CSW01_03790 are separated by 9 nucleotides
CSW01_03780: CSW01_03780 - polyphosphate kinase 1, at 775,550 to 777,655
_03780
CSW01_03785: CSW01_03785 - phosphate ABC transporter permease, at 777,854 to 780,049
_03785
CSW01_03790: CSW01_03790 - phosphate ABC transporter, permease protein PstA, at 780,059 to 781,705
_03790
Position (kb) 777
778
779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 776.861 kb on + strand, within CSW01_03780 at 776.866 kb on + strand, within CSW01_03780 at 776.869 kb on - strand, within CSW01_03780 at 776.871 kb on - strand, within CSW01_03780 at 776.871 kb on - strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.899 kb on + strand, within CSW01_03780 at 776.907 kb on - strand, within CSW01_03780 at 776.907 kb on - strand, within CSW01_03780 at 776.907 kb on - strand, within CSW01_03780 at 776.907 kb on - strand, within CSW01_03780 at 776.907 kb on - strand, within CSW01_03780 at 776.907 kb on - strand, within CSW01_03780 at 776.933 kb on + strand, within CSW01_03780 at 776.933 kb on + strand, within CSW01_03780 at 776.938 kb on - strand, within CSW01_03780 at 776.941 kb on - strand, within CSW01_03780 at 776.998 kb on + strand, within CSW01_03780 at 776.998 kb on - strand, within CSW01_03780 at 777.006 kb on - strand, within CSW01_03780 at 777.018 kb on - strand, within CSW01_03780 at 777.072 kb on - strand, within CSW01_03780 at 777.102 kb on - strand, within CSW01_03780 at 777.165 kb on + strand, within CSW01_03780 at 777.194 kb on - strand, within CSW01_03780 at 777.219 kb on + strand, within CSW01_03780 at 777.238 kb on + strand, within CSW01_03780 at 777.238 kb on + strand, within CSW01_03780 at 777.241 kb on + strand, within CSW01_03780 at 777.246 kb on - strand, within CSW01_03780 at 777.246 kb on - strand, within CSW01_03780 at 777.254 kb on - strand, within CSW01_03780 at 777.256 kb on - strand, within CSW01_03780 at 777.420 kb on + strand, within CSW01_03780 at 777.428 kb on - strand, within CSW01_03780 at 777.431 kb on - strand, within CSW01_03780 at 777.457 kb on + strand at 777.556 kb on + strand at 777.601 kb on + strand at 777.601 kb on + strand at 777.601 kb on + strand at 777.609 kb on - strand at 777.609 kb on - strand at 777.609 kb on - strand at 777.609 kb on - strand at 777.609 kb on - strand at 777.633 kb on + strand at 777.641 kb on - strand at 777.641 kb on - strand at 777.741 kb on + strand at 777.742 kb on + strand at 777.748 kb on + strand at 777.749 kb on - strand at 777.769 kb on - strand at 777.828 kb on + strand at 777.828 kb on + strand at 777.931 kb on + strand at 778.185 kb on + strand, within CSW01_03785 at 778.193 kb on + strand, within CSW01_03785 at 778.339 kb on - strand, within CSW01_03785 at 778.545 kb on + strand, within CSW01_03785 at 778.825 kb on + strand, within CSW01_03785 at 779.312 kb on + strand, within CSW01_03785 at 779.443 kb on + strand, within CSW01_03785 at 779.477 kb on + strand, within CSW01_03785 at 779.506 kb on + strand, within CSW01_03785 at 779.593 kb on - strand, within CSW01_03785 at 779.812 kb on + strand, within CSW01_03785 at 779.836 kb on + strand at 779.901 kb on + strand at 780.248 kb on + strand, within CSW01_03790 at 780.312 kb on + strand, within CSW01_03790 at 780.658 kb on + strand, within CSW01_03790
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A remove 776,861 + CSW01_03780 0.62 -0.1 776,866 + CSW01_03780 0.62 +0.2 776,869 - CSW01_03780 0.63 +0.0 776,871 - CSW01_03780 0.63 -0.7 776,871 - CSW01_03780 0.63 +1.0 776,899 + CSW01_03780 0.64 +0.5 776,899 + CSW01_03780 0.64 -0.4 776,899 + CSW01_03780 0.64 +0.2 776,899 + CSW01_03780 0.64 +0.2 776,899 + CSW01_03780 0.64 +0.5 776,899 + CSW01_03780 0.64 +0.8 776,899 + CSW01_03780 0.64 +0.5 776,907 - CSW01_03780 0.64 +0.3 776,907 - CSW01_03780 0.64 -0.3 776,907 - CSW01_03780 0.64 +0.4 776,907 - CSW01_03780 0.64 +0.9 776,907 - CSW01_03780 0.64 +0.4 776,907 - CSW01_03780 0.64 -0.5 776,933 + CSW01_03780 0.66 +0.5 776,933 + CSW01_03780 0.66 +0.9 776,938 - CSW01_03780 0.66 -0.0 776,941 - CSW01_03780 0.66 +0.1 776,998 + CSW01_03780 0.69 +0.2 776,998 - CSW01_03780 0.69 +0.2 777,006 - CSW01_03780 0.69 +0.5 777,018 - CSW01_03780 0.70 +0.4 777,072 - CSW01_03780 0.72 -0.7 777,102 - CSW01_03780 0.74 +0.6 777,165 + CSW01_03780 0.77 -0.2 777,194 - CSW01_03780 0.78 +0.6 777,219 + CSW01_03780 0.79 +0.8 777,238 + CSW01_03780 0.80 +0.6 777,238 + CSW01_03780 0.80 +0.9 777,241 + CSW01_03780 0.80 -0.6 777,246 - CSW01_03780 0.81 -0.1 777,246 - CSW01_03780 0.81 +1.4 777,254 - CSW01_03780 0.81 +1.1 777,256 - CSW01_03780 0.81 +1.5 777,420 + CSW01_03780 0.89 +0.2 777,428 - CSW01_03780 0.89 -0.0 777,431 - CSW01_03780 0.89 -0.1 777,457 + -0.1 777,556 + +0.0 777,601 + +0.2 777,601 + +0.5 777,601 + -0.4 777,609 - +1.0 777,609 - -0.6 777,609 - -0.5 777,609 - +0.5 777,609 - +0.2 777,633 + +0.2 777,641 - +0.0 777,641 - +0.1 777,741 + +0.4 777,742 + +0.4 777,748 + +0.6 777,749 - +1.2 777,769 - +0.5 777,828 + +0.5 777,828 + -1.1 777,931 + -0.9 778,185 + CSW01_03785 0.15 -1.3 778,193 + CSW01_03785 0.15 -0.2 778,339 - CSW01_03785 0.22 -1.0 778,545 + CSW01_03785 0.31 -2.9 778,825 + CSW01_03785 0.44 -0.5 779,312 + CSW01_03785 0.66 -0.7 779,443 + CSW01_03785 0.72 -1.0 779,477 + CSW01_03785 0.74 +1.5 779,506 + CSW01_03785 0.75 -0.0 779,593 - CSW01_03785 0.79 -0.5 779,812 + CSW01_03785 0.89 +1.1 779,836 + +1.5 779,901 + -0.1 780,248 + CSW01_03790 0.11 -1.3 780,312 + CSW01_03790 0.15 -0.2 780,658 + CSW01_03790 0.36 -1.0
Or see this region's nucleotide sequence