Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03655

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03650 and CSW01_03655 are separated by 361 nucleotidesCSW01_03655 and CSW01_03660 are separated by 9 nucleotidesCSW01_03660 and CSW01_03665 are separated by 77 nucleotidesCSW01_03665 and CSW01_03670 overlap by 80 nucleotides CSW01_03650: CSW01_03650 - energy-dependent translational throttle protein EttA, at 745,100 to 746,767 _03650 CSW01_03655: CSW01_03655 - murein transglycosylase, at 747,129 to 749,075 _03655 CSW01_03660: CSW01_03660 - trp operon repressor, at 749,085 to 749,441 _03660 CSW01_03665: CSW01_03665 - non-canonical purine NTP phosphatase, at 749,519 to 750,070 _03665 CSW01_03670: CSW01_03670 - biofilm architecture maintenance protein MbaA, at 749,991 to 752,366 _03670 Position (kb) 747 748 749 750Strain fitness (log2 ratio) -1 0 1 2at 746.279 kb on - strand, within CSW01_03650at 746.282 kb on + strand, within CSW01_03650at 746.333 kb on + strand, within CSW01_03650at 746.341 kb on - strand, within CSW01_03650at 746.341 kb on - strand, within CSW01_03650at 746.341 kb on - strand, within CSW01_03650at 746.380 kb on - strand, within CSW01_03650at 746.393 kb on - strand, within CSW01_03650at 746.417 kb on + strand, within CSW01_03650at 746.419 kb on - strand, within CSW01_03650at 746.442 kb on + strand, within CSW01_03650at 746.442 kb on + strand, within CSW01_03650at 746.449 kb on - strand, within CSW01_03650at 746.450 kb on - strand, within CSW01_03650at 746.514 kb on + strand, within CSW01_03650at 746.514 kb on + strand, within CSW01_03650at 746.514 kb on + strand, within CSW01_03650at 746.522 kb on - strand, within CSW01_03650at 746.522 kb on - strand, within CSW01_03650at 746.522 kb on - strand, within CSW01_03650at 746.565 kb on - strand, within CSW01_03650at 746.594 kb on - strand, within CSW01_03650at 746.651 kb on - strandat 746.727 kb on + strandat 746.730 kb on - strandat 746.730 kb on - strandat 746.747 kb on + strandat 746.748 kb on + strandat 746.785 kb on - strandat 746.803 kb on - strandat 747.055 kb on + strandat 747.063 kb on - strandat 747.109 kb on + strandat 747.153 kb on - strandat 747.179 kb on - strandat 747.196 kb on - strandat 747.196 kb on - strandat 747.212 kb on + strandat 747.243 kb on + strandat 747.263 kb on + strandat 747.330 kb on - strand, within CSW01_03655at 747.336 kb on - strand, within CSW01_03655at 747.412 kb on + strand, within CSW01_03655at 747.454 kb on + strand, within CSW01_03655at 747.471 kb on - strand, within CSW01_03655at 747.572 kb on + strand, within CSW01_03655at 747.572 kb on + strand, within CSW01_03655at 747.592 kb on - strand, within CSW01_03655at 747.634 kb on + strand, within CSW01_03655at 747.682 kb on + strand, within CSW01_03655at 747.728 kb on - strand, within CSW01_03655at 747.799 kb on - strand, within CSW01_03655at 747.804 kb on - strand, within CSW01_03655at 747.819 kb on + strand, within CSW01_03655at 747.825 kb on + strand, within CSW01_03655at 747.833 kb on - strand, within CSW01_03655at 747.879 kb on + strand, within CSW01_03655at 747.912 kb on - strand, within CSW01_03655at 747.951 kb on + strand, within CSW01_03655at 747.959 kb on - strand, within CSW01_03655at 747.978 kb on + strand, within CSW01_03655at 748.015 kb on + strand, within CSW01_03655at 748.023 kb on - strand, within CSW01_03655at 748.023 kb on - strand, within CSW01_03655at 748.063 kb on - strand, within CSW01_03655at 748.066 kb on + strand, within CSW01_03655at 748.066 kb on + strand, within CSW01_03655at 748.099 kb on + strand, within CSW01_03655at 748.174 kb on - strand, within CSW01_03655at 748.225 kb on - strand, within CSW01_03655at 748.279 kb on + strand, within CSW01_03655at 748.287 kb on - strand, within CSW01_03655at 748.335 kb on - strand, within CSW01_03655at 748.352 kb on + strand, within CSW01_03655at 748.360 kb on - strand, within CSW01_03655at 748.398 kb on + strand, within CSW01_03655at 748.472 kb on + strand, within CSW01_03655at 748.494 kb on + strand, within CSW01_03655at 748.615 kb on + strand, within CSW01_03655at 748.630 kb on + strand, within CSW01_03655at 748.630 kb on + strand, within CSW01_03655at 748.674 kb on - strand, within CSW01_03655at 748.674 kb on - strand, within CSW01_03655at 748.699 kb on + strand, within CSW01_03655at 748.735 kb on + strand, within CSW01_03655at 748.759 kb on + strand, within CSW01_03655at 748.760 kb on + strand, within CSW01_03655at 748.767 kb on - strand, within CSW01_03655at 748.768 kb on - strand, within CSW01_03655at 748.845 kb on - strand, within CSW01_03655at 748.845 kb on - strand, within CSW01_03655at 748.871 kb on + strand, within CSW01_03655at 748.879 kb on - strand, within CSW01_03655at 748.892 kb on + strandat 748.958 kb on - strandat 748.962 kb on + strandat 748.975 kb on + strandat 749.069 kb on + strandat 749.106 kb on + strandat 749.175 kb on - strand, within CSW01_03660at 749.194 kb on + strand, within CSW01_03660at 749.233 kb on + strand, within CSW01_03660at 749.241 kb on - strand, within CSW01_03660at 749.264 kb on + strand, within CSW01_03660at 749.285 kb on + strand, within CSW01_03660at 749.366 kb on + strand, within CSW01_03660at 749.397 kb on + strand, within CSW01_03660at 749.597 kb on + strand, within CSW01_03665at 749.655 kb on + strand, within CSW01_03665at 749.655 kb on + strand, within CSW01_03665at 749.734 kb on + strand, within CSW01_03665at 749.734 kb on + strand, within CSW01_03665at 749.744 kb on + strand, within CSW01_03665at 749.752 kb on - strand, within CSW01_03665at 749.799 kb on - strand, within CSW01_03665at 749.800 kb on - strand, within CSW01_03665at 749.826 kb on + strand, within CSW01_03665at 749.826 kb on + strand, within CSW01_03665at 749.833 kb on + strand, within CSW01_03665at 749.834 kb on - strand, within CSW01_03665at 749.836 kb on + strand, within CSW01_03665at 749.854 kb on + strand, within CSW01_03665at 749.873 kb on + strand, within CSW01_03665at 749.881 kb on - strand, within CSW01_03665at 749.904 kb on + strand, within CSW01_03665at 749.932 kb on + strand, within CSW01_03665at 749.935 kb on - strand, within CSW01_03665at 749.986 kb on - strand, within CSW01_03665at 749.986 kb on - strand, within CSW01_03665at 749.996 kb on - strandat 750.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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746,279 - CSW01_03650 0.71 +2.1
746,282 + CSW01_03650 0.71 -0.5
746,333 + CSW01_03650 0.74 +0.7
746,341 - CSW01_03650 0.74 -0.3
746,341 - CSW01_03650 0.74 +0.2
746,341 - CSW01_03650 0.74 +0.8
746,380 - CSW01_03650 0.77 -0.7
746,393 - CSW01_03650 0.78 +1.0
746,417 + CSW01_03650 0.79 +0.1
746,419 - CSW01_03650 0.79 +0.8
746,442 + CSW01_03650 0.80 +0.7
746,442 + CSW01_03650 0.80 -1.0
746,449 - CSW01_03650 0.81 +1.1
746,450 - CSW01_03650 0.81 +0.1
746,514 + CSW01_03650 0.85 +0.2
746,514 + CSW01_03650 0.85 +0.1
746,514 + CSW01_03650 0.85 -0.1
746,522 - CSW01_03650 0.85 -1.2
746,522 - CSW01_03650 0.85 +0.3
746,522 - CSW01_03650 0.85 -0.3
746,565 - CSW01_03650 0.88 +0.4
746,594 - CSW01_03650 0.90 +1.1
746,651 - -0.0
746,727 + -1.4
746,730 - +1.4
746,730 - +0.4
746,747 + +0.2
746,748 + +0.2
746,785 - +2.0
746,803 - +0.4
747,055 + +0.0
747,063 - +1.6
747,109 + +1.1
747,153 - +0.1
747,179 - +0.3
747,196 - +0.6
747,196 - -0.1
747,212 + +0.2
747,243 + +0.4
747,263 + +0.9
747,330 - CSW01_03655 0.10 +0.1
747,336 - CSW01_03655 0.11 +1.1
747,412 + CSW01_03655 0.15 +0.8
747,454 + CSW01_03655 0.17 +0.5
747,471 - CSW01_03655 0.18 -0.2
747,572 + CSW01_03655 0.23 +0.4
747,572 + CSW01_03655 0.23 +0.5
747,592 - CSW01_03655 0.24 +1.8
747,634 + CSW01_03655 0.26 +1.3
747,682 + CSW01_03655 0.28 -0.7
747,728 - CSW01_03655 0.31 +0.4
747,799 - CSW01_03655 0.34 -0.0
747,804 - CSW01_03655 0.35 +0.1
747,819 + CSW01_03655 0.35 -0.1
747,825 + CSW01_03655 0.36 +0.5
747,833 - CSW01_03655 0.36 +0.6
747,879 + CSW01_03655 0.39 +1.0
747,912 - CSW01_03655 0.40 +1.2
747,951 + CSW01_03655 0.42 +0.4
747,959 - CSW01_03655 0.43 +1.1
747,978 + CSW01_03655 0.44 +0.4
748,015 + CSW01_03655 0.46 +0.3
748,023 - CSW01_03655 0.46 +0.9
748,023 - CSW01_03655 0.46 +0.8
748,063 - CSW01_03655 0.48 +0.6
748,066 + CSW01_03655 0.48 +1.3
748,066 + CSW01_03655 0.48 +1.0
748,099 + CSW01_03655 0.50 +0.6
748,174 - CSW01_03655 0.54 +1.1
748,225 - CSW01_03655 0.56 +0.6
748,279 + CSW01_03655 0.59 +0.2
748,287 - CSW01_03655 0.59 +0.9
748,335 - CSW01_03655 0.62 +0.8
748,352 + CSW01_03655 0.63 +1.5
748,360 - CSW01_03655 0.63 +0.3
748,398 + CSW01_03655 0.65 +0.5
748,472 + CSW01_03655 0.69 -0.6
748,494 + CSW01_03655 0.70 +0.6
748,615 + CSW01_03655 0.76 +0.5
748,630 + CSW01_03655 0.77 +1.0
748,630 + CSW01_03655 0.77 +1.0
748,674 - CSW01_03655 0.79 +0.7
748,674 - CSW01_03655 0.79 +0.7
748,699 + CSW01_03655 0.81 +1.7
748,735 + CSW01_03655 0.82 -1.0
748,759 + CSW01_03655 0.84 -0.4
748,760 + CSW01_03655 0.84 +0.3
748,767 - CSW01_03655 0.84 -0.6
748,768 - CSW01_03655 0.84 +0.7
748,845 - CSW01_03655 0.88 +0.6
748,845 - CSW01_03655 0.88 +0.3
748,871 + CSW01_03655 0.89 -0.4
748,879 - CSW01_03655 0.90 -0.0
748,892 + +0.7
748,958 - +0.4
748,962 + +0.4
748,975 + +0.6
749,069 + -0.1
749,106 + +0.9
749,175 - CSW01_03660 0.25 +1.0
749,194 + CSW01_03660 0.31 -0.9
749,233 + CSW01_03660 0.41 +1.0
749,241 - CSW01_03660 0.44 -0.1
749,264 + CSW01_03660 0.50 +0.6
749,285 + CSW01_03660 0.56 +0.4
749,366 + CSW01_03660 0.79 -0.7
749,397 + CSW01_03660 0.87 -0.1
749,597 + CSW01_03665 0.14 -0.6
749,655 + CSW01_03665 0.25 +0.3
749,655 + CSW01_03665 0.25 +1.8
749,734 + CSW01_03665 0.39 +0.5
749,734 + CSW01_03665 0.39 +0.3
749,744 + CSW01_03665 0.41 -1.2
749,752 - CSW01_03665 0.42 -1.5
749,799 - CSW01_03665 0.51 +0.9
749,800 - CSW01_03665 0.51 +0.3
749,826 + CSW01_03665 0.56 -0.2
749,826 + CSW01_03665 0.56 -0.1
749,833 + CSW01_03665 0.57 -0.1
749,834 - CSW01_03665 0.57 +1.0
749,836 + CSW01_03665 0.57 +0.4
749,854 + CSW01_03665 0.61 +0.4
749,873 + CSW01_03665 0.64 +0.7
749,881 - CSW01_03665 0.66 +0.3
749,904 + CSW01_03665 0.70 +1.0
749,932 + CSW01_03665 0.75 -0.2
749,935 - CSW01_03665 0.75 +0.2
749,986 - CSW01_03665 0.85 +1.6
749,986 - CSW01_03665 0.85 +0.4
749,996 - -1.1
750,025 + +0.4

Or see this region's nucleotide sequence