Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03510

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03500 and CSW01_03505 are separated by 577 nucleotidesCSW01_03505 and CSW01_03510 are separated by 37 nucleotidesCSW01_03510 and CSW01_03515 are separated by 192 nucleotides CSW01_03500: CSW01_03500 - sigma-54-dependent Fis family transcriptional regulator, at 711,139 to 712,473 _03500 CSW01_03505: CSW01_03505 - hypothetical protein, at 713,051 to 713,302 _03505 CSW01_03510: CSW01_03510 - NADP(H)-dependent aldo-keto reductase, at 713,340 to 714,398 _03510 CSW01_03515: CSW01_03515 - DNA mismatch repair protein MutH, at 714,591 to 715,256 _03515 Position (kb) 713 714 715Strain fitness (log2 ratio) -1 0 1 2at 712.475 kb on - strandat 712.557 kb on + strandat 712.806 kb on + strandat 712.950 kb on + strandat 712.988 kb on - strandat 713.094 kb on + strand, within CSW01_03505at 713.102 kb on - strand, within CSW01_03505at 713.102 kb on - strand, within CSW01_03505at 713.145 kb on - strand, within CSW01_03505at 713.228 kb on - strand, within CSW01_03505at 713.275 kb on + strand, within CSW01_03505at 713.275 kb on + strand, within CSW01_03505at 713.310 kb on + strandat 713.318 kb on + strandat 713.318 kb on - strandat 713.328 kb on - strandat 713.553 kb on + strand, within CSW01_03510at 713.579 kb on + strand, within CSW01_03510at 713.611 kb on + strand, within CSW01_03510at 713.612 kb on - strand, within CSW01_03510at 713.617 kb on - strand, within CSW01_03510at 713.631 kb on - strand, within CSW01_03510at 713.631 kb on - strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.693 kb on + strand, within CSW01_03510at 713.740 kb on - strand, within CSW01_03510at 713.779 kb on + strand, within CSW01_03510at 713.797 kb on - strand, within CSW01_03510at 713.827 kb on + strand, within CSW01_03510at 713.885 kb on - strand, within CSW01_03510at 713.902 kb on - strand, within CSW01_03510at 713.912 kb on + strand, within CSW01_03510at 713.935 kb on + strand, within CSW01_03510at 713.941 kb on + strand, within CSW01_03510at 714.156 kb on - strand, within CSW01_03510at 714.181 kb on + strand, within CSW01_03510at 714.192 kb on + strand, within CSW01_03510at 714.222 kb on - strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.272 kb on + strand, within CSW01_03510at 714.310 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.428 kb on + strandat 714.452 kb on - strandat 714.485 kb on + strandat 714.485 kb on + strandat 714.556 kb on - strandat 714.638 kb on + strandat 714.646 kb on - strandat 714.696 kb on - strand, within CSW01_03515at 714.741 kb on + strand, within CSW01_03515at 714.766 kb on + strand, within CSW01_03515at 714.766 kb on + strand, within CSW01_03515at 714.766 kb on + strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.774 kb on - strand, within CSW01_03515at 714.789 kb on + strand, within CSW01_03515at 714.808 kb on + strand, within CSW01_03515at 714.816 kb on - strand, within CSW01_03515at 714.816 kb on - strand, within CSW01_03515at 714.816 kb on - strand, within CSW01_03515at 714.848 kb on + strand, within CSW01_03515at 714.856 kb on - strand, within CSW01_03515at 714.856 kb on - strand, within CSW01_03515at 714.907 kb on + strand, within CSW01_03515at 714.924 kb on - strand, within CSW01_03515at 714.953 kb on + strand, within CSW01_03515at 714.960 kb on + strand, within CSW01_03515at 714.975 kb on + strand, within CSW01_03515at 714.983 kb on - strand, within CSW01_03515at 715.038 kb on + strand, within CSW01_03515at 715.046 kb on - strand, within CSW01_03515at 715.145 kb on + strand, within CSW01_03515at 715.153 kb on - strand, within CSW01_03515at 715.153 kb on - strand, within CSW01_03515at 715.158 kb on + strand, within CSW01_03515at 715.166 kb on - strand, within CSW01_03515at 715.199 kb on - strandat 715.289 kb on - strandat 715.320 kb on - strandat 715.358 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
remove
712,475 - -0.7
712,557 + +0.2
712,806 + +1.1
712,950 + -0.6
712,988 - +0.0
713,094 + CSW01_03505 0.17 +0.6
713,102 - CSW01_03505 0.20 +0.2
713,102 - CSW01_03505 0.20 +0.7
713,145 - CSW01_03505 0.37 +0.5
713,228 - CSW01_03505 0.70 -0.0
713,275 + CSW01_03505 0.89 +0.2
713,275 + CSW01_03505 0.89 +0.3
713,310 + +0.6
713,318 + +0.1
713,318 - -0.6
713,328 - +0.1
713,553 + CSW01_03510 0.20 -0.4
713,579 + CSW01_03510 0.23 +0.9
713,611 + CSW01_03510 0.26 +1.1
713,612 - CSW01_03510 0.26 +1.0
713,617 - CSW01_03510 0.26 +0.2
713,631 - CSW01_03510 0.27 -0.0
713,631 - CSW01_03510 0.27 +0.6
713,693 + CSW01_03510 0.33 +0.3
713,693 + CSW01_03510 0.33 +0.8
713,693 + CSW01_03510 0.33 +1.0
713,693 + CSW01_03510 0.33 +1.3
713,740 - CSW01_03510 0.38 +1.2
713,779 + CSW01_03510 0.41 +0.5
713,797 - CSW01_03510 0.43 -0.2
713,827 + CSW01_03510 0.46 +2.3
713,885 - CSW01_03510 0.51 +0.1
713,902 - CSW01_03510 0.53 +1.2
713,912 + CSW01_03510 0.54 +0.5
713,935 + CSW01_03510 0.56 -0.2
713,941 + CSW01_03510 0.57 +0.9
714,156 - CSW01_03510 0.77 -0.7
714,181 + CSW01_03510 0.79 +0.9
714,192 + CSW01_03510 0.80 +0.0
714,222 - CSW01_03510 0.83 +0.2
714,272 + CSW01_03510 0.88 +0.1
714,272 + CSW01_03510 0.88 +0.6
714,272 + CSW01_03510 0.88 -0.9
714,272 + CSW01_03510 0.88 -0.0
714,310 - +0.4
714,379 - +0.4
714,379 - -0.2
714,379 - +0.5
714,379 - -0.5
714,428 + +0.4
714,452 - +1.1
714,485 + -1.0
714,485 + +1.2
714,556 - +0.1
714,638 + +0.9
714,646 - -1.3
714,696 - CSW01_03515 0.16 +0.3
714,741 + CSW01_03515 0.23 +0.9
714,766 + CSW01_03515 0.26 -1.1
714,766 + CSW01_03515 0.26 -0.1
714,766 + CSW01_03515 0.26 +0.7
714,774 - CSW01_03515 0.27 -0.2
714,774 - CSW01_03515 0.27 +0.2
714,774 - CSW01_03515 0.27 -0.2
714,774 - CSW01_03515 0.27 +0.2
714,789 + CSW01_03515 0.30 +0.3
714,808 + CSW01_03515 0.33 -0.1
714,816 - CSW01_03515 0.34 +0.2
714,816 - CSW01_03515 0.34 +0.3
714,816 - CSW01_03515 0.34 +0.2
714,848 + CSW01_03515 0.39 -0.4
714,856 - CSW01_03515 0.40 -0.0
714,856 - CSW01_03515 0.40 +0.3
714,907 + CSW01_03515 0.47 +0.9
714,924 - CSW01_03515 0.50 +0.6
714,953 + CSW01_03515 0.54 -1.4
714,960 + CSW01_03515 0.55 +0.5
714,975 + CSW01_03515 0.58 +1.2
714,983 - CSW01_03515 0.59 +0.3
715,038 + CSW01_03515 0.67 +0.1
715,046 - CSW01_03515 0.68 -0.7
715,145 + CSW01_03515 0.83 +0.7
715,153 - CSW01_03515 0.84 +0.7
715,153 - CSW01_03515 0.84 +0.6
715,158 + CSW01_03515 0.85 +0.5
715,166 - CSW01_03515 0.86 +0.1
715,199 - -0.3
715,289 - +1.2
715,320 - +0.1
715,358 + +0.6

Or see this region's nucleotide sequence