Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01720

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01715 and CSW01_01720 are separated by 242 nucleotidesCSW01_01720 and CSW01_01725 are separated by 5 nucleotidesCSW01_01725 and CSW01_01730 are separated by 86 nucleotides CSW01_01715: CSW01_01715 - NADH pyrophosphatase, at 348,199 to 349,008 _01715 CSW01_01720: CSW01_01720 - uroporphyrinogen decarboxylase, at 349,251 to 350,330 _01720 CSW01_01725: CSW01_01725 - TetR family transcriptional regulator, at 350,336 to 351,064 _01725 CSW01_01730: CSW01_01730 - acetyltransferase, at 351,151 to 352,110 _01730 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.274 kb on - strandat 348.285 kb on + strand, within CSW01_01715at 348.320 kb on + strand, within CSW01_01715at 348.325 kb on + strand, within CSW01_01715at 348.375 kb on + strand, within CSW01_01715at 348.382 kb on + strand, within CSW01_01715at 348.390 kb on - strand, within CSW01_01715at 348.582 kb on - strand, within CSW01_01715at 348.595 kb on + strand, within CSW01_01715at 348.595 kb on + strand, within CSW01_01715at 348.595 kb on + strand, within CSW01_01715at 348.631 kb on - strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.727 kb on - strand, within CSW01_01715at 348.731 kb on + strand, within CSW01_01715at 348.731 kb on + strand, within CSW01_01715at 348.733 kb on + strand, within CSW01_01715at 348.739 kb on - strand, within CSW01_01715at 348.739 kb on - strand, within CSW01_01715at 348.739 kb on - strand, within CSW01_01715at 348.766 kb on - strand, within CSW01_01715at 348.804 kb on - strand, within CSW01_01715at 348.870 kb on + strand, within CSW01_01715at 348.870 kb on + strand, within CSW01_01715at 348.870 kb on + strand, within CSW01_01715at 348.878 kb on - strand, within CSW01_01715at 348.878 kb on - strand, within CSW01_01715at 348.897 kb on - strand, within CSW01_01715at 348.969 kb on - strandat 349.071 kb on + strandat 349.139 kb on - strandat 350.384 kb on + strandat 350.384 kb on + strandat 350.384 kb on + strandat 350.392 kb on - strandat 350.477 kb on - strand, within CSW01_01725at 350.483 kb on + strand, within CSW01_01725at 350.494 kb on + strand, within CSW01_01725at 350.506 kb on + strand, within CSW01_01725at 350.507 kb on - strand, within CSW01_01725at 350.527 kb on + strand, within CSW01_01725at 350.596 kb on + strand, within CSW01_01725at 350.596 kb on + strand, within CSW01_01725at 350.637 kb on - strand, within CSW01_01725at 350.649 kb on - strand, within CSW01_01725at 350.775 kb on + strand, within CSW01_01725at 350.907 kb on + strand, within CSW01_01725at 350.946 kb on - strand, within CSW01_01725at 351.031 kb on + strandat 351.053 kb on + strandat 351.053 kb on + strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.061 kb on - strandat 351.072 kb on - strandat 351.079 kb on - strandat 351.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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348,274 - +0.2
348,285 + CSW01_01715 0.11 +0.2
348,320 + CSW01_01715 0.15 +0.2
348,325 + CSW01_01715 0.16 -0.1
348,375 + CSW01_01715 0.22 +1.1
348,382 + CSW01_01715 0.23 +0.4
348,390 - CSW01_01715 0.24 +1.0
348,582 - CSW01_01715 0.47 -0.5
348,595 + CSW01_01715 0.49 +0.2
348,595 + CSW01_01715 0.49 -0.8
348,595 + CSW01_01715 0.49 -0.0
348,631 - CSW01_01715 0.53 +0.2
348,688 + CSW01_01715 0.60 +0.7
348,688 + CSW01_01715 0.60 -0.2
348,688 + CSW01_01715 0.60 +0.8
348,688 + CSW01_01715 0.60 +0.7
348,688 + CSW01_01715 0.60 -0.4
348,688 + CSW01_01715 0.60 +0.5
348,688 + CSW01_01715 0.60 +0.7
348,688 + CSW01_01715 0.60 +0.4
348,688 + CSW01_01715 0.60 +0.7
348,696 - CSW01_01715 0.61 +0.8
348,696 - CSW01_01715 0.61 -0.8
348,696 - CSW01_01715 0.61 +0.2
348,696 - CSW01_01715 0.61 -1.1
348,696 - CSW01_01715 0.61 -2.5
348,696 - CSW01_01715 0.61 -0.3
348,696 - CSW01_01715 0.61 +0.1
348,696 - CSW01_01715 0.61 +0.4
348,696 - CSW01_01715 0.61 -0.4
348,727 - CSW01_01715 0.65 +0.2
348,731 + CSW01_01715 0.66 +0.1
348,731 + CSW01_01715 0.66 -0.1
348,733 + CSW01_01715 0.66 +0.1
348,739 - CSW01_01715 0.67 +1.2
348,739 - CSW01_01715 0.67 -0.2
348,739 - CSW01_01715 0.67 +0.6
348,766 - CSW01_01715 0.70 -1.2
348,804 - CSW01_01715 0.75 +0.4
348,870 + CSW01_01715 0.83 +0.2
348,870 + CSW01_01715 0.83 +0.0
348,870 + CSW01_01715 0.83 +1.9
348,878 - CSW01_01715 0.84 -2.4
348,878 - CSW01_01715 0.84 +0.7
348,897 - CSW01_01715 0.86 +0.9
348,969 - +0.4
349,071 + +0.3
349,139 - -1.0
350,384 + -0.4
350,384 + +0.3
350,384 + +0.5
350,392 - +0.1
350,477 - CSW01_01725 0.19 -1.5
350,483 + CSW01_01725 0.20 +0.7
350,494 + CSW01_01725 0.22 -0.6
350,506 + CSW01_01725 0.23 -0.5
350,507 - CSW01_01725 0.23 -0.5
350,527 + CSW01_01725 0.26 -1.1
350,596 + CSW01_01725 0.36 +0.1
350,596 + CSW01_01725 0.36 -1.1
350,637 - CSW01_01725 0.41 -1.4
350,649 - CSW01_01725 0.43 +0.7
350,775 + CSW01_01725 0.60 +0.1
350,907 + CSW01_01725 0.78 -1.8
350,946 - CSW01_01725 0.84 -0.3
351,031 + -1.1
351,053 + -0.4
351,053 + -1.1
351,061 - -0.6
351,061 - +0.7
351,061 - +0.2
351,061 - -0.1
351,072 - -0.9
351,079 - +1.6
351,085 + +0.9

Or see this region's nucleotide sequence