Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01180

Experiment: LB_0.5%bileacids_Anaerobic_18HR_ZN21A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01170 and CSW01_01175 are separated by 9 nucleotidesCSW01_01175 and CSW01_01180 are separated by 96 nucleotidesCSW01_01180 and CSW01_01185 are separated by 110 nucleotides CSW01_01170: CSW01_01170 - hypothetical protein, at 226,868 to 227,356 _01170 CSW01_01175: CSW01_01175 - formamidopyrimidine-DNA glycosylase, at 227,366 to 228,175 _01175 CSW01_01180: CSW01_01180 - phosphopantetheine adenylyltransferase, at 228,272 to 228,766 _01180 CSW01_01185: CSW01_01185 - ADP-heptose--LPS heptosyltransferase, at 228,877 to 229,914 _01185 Position (kb) 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 227.341 kb on - strandat 227.397 kb on + strandat 227.417 kb on - strandat 227.432 kb on + strandat 227.432 kb on + strandat 227.440 kb on - strandat 227.452 kb on - strand, within CSW01_01175at 227.459 kb on + strand, within CSW01_01175at 227.469 kb on + strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.477 kb on - strand, within CSW01_01175at 227.484 kb on + strand, within CSW01_01175at 227.492 kb on - strand, within CSW01_01175at 227.563 kb on - strand, within CSW01_01175at 227.650 kb on + strand, within CSW01_01175at 227.705 kb on + strand, within CSW01_01175at 227.705 kb on + strand, within CSW01_01175at 227.707 kb on + strand, within CSW01_01175at 227.707 kb on + strand, within CSW01_01175at 227.707 kb on + strand, within CSW01_01175at 227.713 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.715 kb on - strand, within CSW01_01175at 227.723 kb on + strand, within CSW01_01175at 227.728 kb on - strand, within CSW01_01175at 227.730 kb on + strand, within CSW01_01175at 227.731 kb on - strand, within CSW01_01175at 227.740 kb on + strand, within CSW01_01175at 227.748 kb on - strand, within CSW01_01175at 227.754 kb on + strand, within CSW01_01175at 227.817 kb on - strand, within CSW01_01175at 227.824 kb on + strand, within CSW01_01175at 227.855 kb on - strand, within CSW01_01175at 227.855 kb on - strand, within CSW01_01175at 227.901 kb on - strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.937 kb on + strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.945 kb on - strand, within CSW01_01175at 227.955 kb on + strand, within CSW01_01175at 227.955 kb on + strand, within CSW01_01175at 227.963 kb on - strand, within CSW01_01175at 227.963 kb on - strand, within CSW01_01175at 228.002 kb on + strand, within CSW01_01175at 228.006 kb on + strand, within CSW01_01175at 228.071 kb on + strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.079 kb on - strand, within CSW01_01175at 228.091 kb on + strand, within CSW01_01175at 228.099 kb on - strandat 228.099 kb on - strandat 228.099 kb on - strandat 228.137 kb on - strandat 228.147 kb on - strandat 228.196 kb on - strandat 228.220 kb on + strandat 228.228 kb on - strandat 228.236 kb on + strandat 228.244 kb on - strandat 228.261 kb on + strandat 228.261 kb on + strandat 228.269 kb on - strandat 228.826 kb on - strandat 228.948 kb on + strandat 228.956 kb on - strandat 229.015 kb on + strand, within CSW01_01185at 229.025 kb on - strand, within CSW01_01185at 229.049 kb on + strand, within CSW01_01185at 229.057 kb on - strand, within CSW01_01185at 229.085 kb on - strand, within CSW01_01185at 229.089 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.134 kb on + strand, within CSW01_01185at 229.142 kb on - strand, within CSW01_01185at 229.144 kb on + strand, within CSW01_01185at 229.152 kb on - strand, within CSW01_01185at 229.164 kb on - strand, within CSW01_01185at 229.227 kb on + strand, within CSW01_01185at 229.240 kb on - strand, within CSW01_01185at 229.345 kb on + strand, within CSW01_01185at 229.352 kb on - strand, within CSW01_01185at 229.363 kb on + strand, within CSW01_01185at 229.401 kb on + strand, within CSW01_01185at 229.423 kb on + strand, within CSW01_01185at 229.472 kb on + strand, within CSW01_01185at 229.472 kb on + strand, within CSW01_01185at 229.480 kb on - strand, within CSW01_01185at 229.480 kb on - strand, within CSW01_01185at 229.484 kb on + strand, within CSW01_01185at 229.494 kb on + strand, within CSW01_01185at 229.528 kb on - strand, within CSW01_01185at 229.535 kb on + strand, within CSW01_01185at 229.653 kb on + strand, within CSW01_01185at 229.665 kb on + strand, within CSW01_01185at 229.741 kb on + strand, within CSW01_01185

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_18HR_ZN21A
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227,341 - -0.3
227,397 + +0.1
227,417 - +1.2
227,432 + -0.8
227,432 + -0.1
227,440 - -1.2
227,452 - CSW01_01175 0.11 +2.0
227,459 + CSW01_01175 0.11 -0.3
227,469 + CSW01_01175 0.13 -0.4
227,477 - CSW01_01175 0.14 -0.2
227,477 - CSW01_01175 0.14 -0.1
227,477 - CSW01_01175 0.14 -0.1
227,484 + CSW01_01175 0.15 -1.2
227,492 - CSW01_01175 0.16 -0.6
227,563 - CSW01_01175 0.24 -0.2
227,650 + CSW01_01175 0.35 -0.8
227,705 + CSW01_01175 0.42 -0.3
227,705 + CSW01_01175 0.42 +0.1
227,707 + CSW01_01175 0.42 +0.4
227,707 + CSW01_01175 0.42 +0.3
227,707 + CSW01_01175 0.42 -0.3
227,713 - CSW01_01175 0.43 -0.2
227,715 - CSW01_01175 0.43 -0.3
227,715 - CSW01_01175 0.43 -0.0
227,715 - CSW01_01175 0.43 -0.5
227,715 - CSW01_01175 0.43 -0.1
227,723 + CSW01_01175 0.44 +0.3
227,728 - CSW01_01175 0.45 +0.2
227,730 + CSW01_01175 0.45 +0.7
227,731 - CSW01_01175 0.45 +0.6
227,740 + CSW01_01175 0.46 +0.1
227,748 - CSW01_01175 0.47 +0.1
227,754 + CSW01_01175 0.48 +0.0
227,817 - CSW01_01175 0.56 -0.7
227,824 + CSW01_01175 0.57 +0.2
227,855 - CSW01_01175 0.60 +0.1
227,855 - CSW01_01175 0.60 -0.4
227,901 - CSW01_01175 0.66 -0.1
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 -1.6
227,937 + CSW01_01175 0.70 +0.7
227,937 + CSW01_01175 0.70 +0.2
227,937 + CSW01_01175 0.70 +0.1
227,937 + CSW01_01175 0.70 +1.1
227,937 + CSW01_01175 0.70 -0.3
227,937 + CSW01_01175 0.70 +1.2
227,937 + CSW01_01175 0.70 +0.0
227,937 + CSW01_01175 0.70 -0.1
227,937 + CSW01_01175 0.70 +0.2
227,937 + CSW01_01175 0.70 +0.2
227,937 + CSW01_01175 0.70 +0.4
227,937 + CSW01_01175 0.70 -0.0
227,937 + CSW01_01175 0.70 +0.4
227,937 + CSW01_01175 0.70 +0.8
227,937 + CSW01_01175 0.70 +1.3
227,937 + CSW01_01175 0.70 -0.4
227,937 + CSW01_01175 0.70 -0.3
227,937 + CSW01_01175 0.70 -0.0
227,945 - CSW01_01175 0.71 +0.1
227,945 - CSW01_01175 0.71 -0.3
227,945 - CSW01_01175 0.71 -0.4
227,945 - CSW01_01175 0.71 +1.1
227,945 - CSW01_01175 0.71 +0.7
227,945 - CSW01_01175 0.71 -0.2
227,945 - CSW01_01175 0.71 +1.1
227,945 - CSW01_01175 0.71 +0.6
227,945 - CSW01_01175 0.71 -0.1
227,945 - CSW01_01175 0.71 -0.3
227,945 - CSW01_01175 0.71 +1.1
227,945 - CSW01_01175 0.71 -0.1
227,945 - CSW01_01175 0.71 +0.0
227,945 - CSW01_01175 0.71 -0.7
227,945 - CSW01_01175 0.71 +0.0
227,945 - CSW01_01175 0.71 +0.5
227,945 - CSW01_01175 0.71 -0.1
227,945 - CSW01_01175 0.71 -0.5
227,945 - CSW01_01175 0.71 +0.5
227,945 - CSW01_01175 0.71 +0.2
227,945 - CSW01_01175 0.71 -0.4
227,945 - CSW01_01175 0.71 -0.5
227,945 - CSW01_01175 0.71 -1.3
227,955 + CSW01_01175 0.73 +0.7
227,955 + CSW01_01175 0.73 -0.1
227,963 - CSW01_01175 0.74 +0.2
227,963 - CSW01_01175 0.74 -0.2
228,002 + CSW01_01175 0.79 +0.0
228,006 + CSW01_01175 0.79 -0.2
228,071 + CSW01_01175 0.87 +0.2
228,079 - CSW01_01175 0.88 -0.3
228,079 - CSW01_01175 0.88 +0.4
228,079 - CSW01_01175 0.88 +0.7
228,091 + CSW01_01175 0.90 -1.0
228,099 - -0.5
228,099 - -0.2
228,099 - -0.2
228,137 - -0.2
228,147 - +0.0
228,196 - -1.0
228,220 + +1.0
228,228 - +0.7
228,236 + -0.5
228,244 - +0.0
228,261 + +0.1
228,261 + -0.4
228,269 - -0.7
228,826 - -0.3
228,948 + +0.5
228,956 - -0.3
229,015 + CSW01_01185 0.13 +0.3
229,025 - CSW01_01185 0.14 +0.8
229,049 + CSW01_01185 0.17 -0.3
229,057 - CSW01_01185 0.17 -0.3
229,085 - CSW01_01185 0.20 +1.3
229,089 + CSW01_01185 0.20 +1.1
229,134 + CSW01_01185 0.25 +0.0
229,134 + CSW01_01185 0.25 -1.1
229,134 + CSW01_01185 0.25 +1.7
229,142 - CSW01_01185 0.26 +0.5
229,144 + CSW01_01185 0.26 +0.3
229,152 - CSW01_01185 0.26 -0.4
229,164 - CSW01_01185 0.28 -0.3
229,227 + CSW01_01185 0.34 +1.6
229,240 - CSW01_01185 0.35 +1.0
229,345 + CSW01_01185 0.45 +2.3
229,352 - CSW01_01185 0.46 +1.3
229,363 + CSW01_01185 0.47 +0.7
229,401 + CSW01_01185 0.50 +0.7
229,423 + CSW01_01185 0.53 +2.3
229,472 + CSW01_01185 0.57 +0.7
229,472 + CSW01_01185 0.57 -0.3
229,480 - CSW01_01185 0.58 +0.3
229,480 - CSW01_01185 0.58 +0.2
229,484 + CSW01_01185 0.58 +0.4
229,494 + CSW01_01185 0.59 +0.8
229,528 - CSW01_01185 0.63 -0.2
229,535 + CSW01_01185 0.63 +1.2
229,653 + CSW01_01185 0.75 -0.4
229,665 + CSW01_01185 0.76 -1.0
229,741 + CSW01_01185 0.83 -1.8

Or see this region's nucleotide sequence